Hb_000739_220

Information

Type -
Description -
Location Contig739: 185852-195214
Sequence    

Annotation

kegg
ID rcu:RCOM_1612320
description cytohesin 1, 2, 3, putative
nr
ID XP_012083558.1
description PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
swissprot
ID Q9LZX8
description Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1
trembl
ID A0A067JY10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14513 PE=4 SV=1
Gene Ontology
ID GO:0005086
description brefeldin a-inhibited guanine nucleotide-exchange protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56296: 185929-195261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_220 0.0 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
2 Hb_000743_050 0.060723763 - - unnamed protein product [Vitis vinifera]
3 Hb_000347_130 0.0737985355 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
4 Hb_025012_010 0.0800765354 - - PREDICTED: importin-4 [Vitis vinifera]
5 Hb_000158_100 0.0847575478 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001322_210 0.0859416355 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
7 Hb_000613_080 0.090081323 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
8 Hb_000600_070 0.0908836875 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
9 Hb_002028_170 0.0938147111 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
10 Hb_001357_270 0.0957008708 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
11 Hb_002067_150 0.0960091673 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
12 Hb_005205_020 0.0965296881 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
13 Hb_067345_010 0.0974175125 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
14 Hb_001900_110 0.097586113 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
15 Hb_011716_020 0.0989051101 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
16 Hb_042487_010 0.1005963849 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
17 Hb_000780_220 0.1007018938 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
18 Hb_007904_220 0.1018924168 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
19 Hb_028639_010 0.1023596235 - - transporter, putative [Ricinus communis]
20 Hb_003966_030 0.1028805357 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]

Gene co-expression network

sample Hb_000739_220 Hb_000739_220 Hb_000743_050 Hb_000743_050 Hb_000739_220--Hb_000743_050 Hb_000347_130 Hb_000347_130 Hb_000739_220--Hb_000347_130 Hb_025012_010 Hb_025012_010 Hb_000739_220--Hb_025012_010 Hb_000158_100 Hb_000158_100 Hb_000739_220--Hb_000158_100 Hb_001322_210 Hb_001322_210 Hb_000739_220--Hb_001322_210 Hb_000613_080 Hb_000613_080 Hb_000739_220--Hb_000613_080 Hb_000743_050--Hb_000158_100 Hb_000743_050--Hb_000347_130 Hb_000743_050--Hb_001322_210 Hb_081879_030 Hb_081879_030 Hb_000743_050--Hb_081879_030 Hb_000743_050--Hb_025012_010 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_002028_170 Hb_002028_170 Hb_000158_100--Hb_002028_170 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_000780_220 Hb_000780_220 Hb_001322_210--Hb_000780_220 Hb_002291_070 Hb_002291_070 Hb_001322_210--Hb_002291_070 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_002471_210 Hb_002471_210 Hb_001322_210--Hb_002471_210 Hb_001322_210--Hb_000347_130 Hb_007849_020 Hb_007849_020 Hb_001322_210--Hb_007849_020 Hb_001617_060 Hb_001617_060 Hb_000613_080--Hb_001617_060 Hb_000613_080--Hb_003966_030 Hb_174821_010 Hb_174821_010 Hb_000613_080--Hb_174821_010 Hb_003449_070 Hb_003449_070 Hb_000613_080--Hb_003449_070 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000922_370 Hb_000922_370 Hb_000613_080--Hb_000922_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9054 37.3997 9.99738 26.0334 58.4492 94.5963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4249 12.7562 41.454 43.9568 20.2029

CAGE analysis