Hb_000739_270

Information

Type -
Description -
Location Contig739: 235947-238643
Sequence    

Annotation

kegg
ID tcc:TCM_005482
description Ataurora3
nr
ID XP_012083545.1
description PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
swissprot
ID O64629
description Serine/threonine-protein kinase Aurora-3 OS=Arabidopsis thaliana GN=AUR3 PE=2 SV=1
trembl
ID A0A067JY03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14503 PE=4 SV=1
Gene Ontology
ID GO:0005819
description serine threonine-protein kinase aurora-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56300: 236137-238000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_270 0.0 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
2 Hb_036790_030 0.1707313436 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
3 Hb_004162_230 0.1824435547 - - PREDICTED: histone H2B [Jatropha curcas]
4 Hb_008994_010 0.1897296286 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000345_130 0.1924812432 - - unnamed protein product [Coffea canephora]
6 Hb_008406_100 0.1991792614 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
7 Hb_010998_050 0.2026989569 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
8 Hb_005162_130 0.2032337118 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
9 Hb_000321_080 0.2040894742 - - histone H4 [Zea mays]
10 Hb_001329_190 0.2046636793 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_000345_410 0.2095070948 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
12 Hb_002007_280 0.2131808547 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
13 Hb_013834_010 0.2216597586 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
14 Hb_013344_010 0.2219055601 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
15 Hb_002307_020 0.2221713646 - - PREDICTED: histone H1-like [Jatropha curcas]
16 Hb_005211_150 0.223828039 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
17 Hb_001329_010 0.2244566983 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000638_260 0.2291317114 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
19 Hb_002007_040 0.2295906577 - - unnamed protein product [Coffea canephora]
20 Hb_074792_010 0.2335709125 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]

Gene co-expression network

sample Hb_000739_270 Hb_000739_270 Hb_036790_030 Hb_036790_030 Hb_000739_270--Hb_036790_030 Hb_004162_230 Hb_004162_230 Hb_000739_270--Hb_004162_230 Hb_008994_010 Hb_008994_010 Hb_000739_270--Hb_008994_010 Hb_000345_130 Hb_000345_130 Hb_000739_270--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_000739_270--Hb_008406_100 Hb_010998_050 Hb_010998_050 Hb_000739_270--Hb_010998_050 Hb_036790_030--Hb_010998_050 Hb_036790_030--Hb_000345_130 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_000349_230 Hb_000349_230 Hb_036790_030--Hb_000349_230 Hb_002411_060 Hb_002411_060 Hb_004162_230--Hb_002411_060 Hb_157022_030 Hb_157022_030 Hb_004162_230--Hb_157022_030 Hb_004162_230--Hb_002307_020 Hb_004162_230--Hb_036790_030 Hb_004162_230--Hb_010998_050 Hb_008994_010--Hb_036790_030 Hb_000638_260 Hb_000638_260 Hb_008994_010--Hb_000638_260 Hb_000321_080 Hb_000321_080 Hb_008994_010--Hb_000321_080 Hb_008994_010--Hb_010998_050 Hb_000345_410 Hb_000345_410 Hb_008994_010--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_000345_130--Hb_002007_280 Hb_005162_130 Hb_005162_130 Hb_000345_130--Hb_005162_130 Hb_000345_130--Hb_000349_230 Hb_000345_130--Hb_010998_050 Hb_000345_130--Hb_000345_410 Hb_008406_100--Hb_005162_130 Hb_008406_100--Hb_002007_280 Hb_008406_100--Hb_000345_410 Hb_024973_020 Hb_024973_020 Hb_008406_100--Hb_024973_020 Hb_000365_210 Hb_000365_210 Hb_008406_100--Hb_000365_210 Hb_001501_070 Hb_001501_070 Hb_008406_100--Hb_001501_070 Hb_010998_050--Hb_000345_410 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_000349_230 Hb_010998_050--Hb_005162_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.251024 0.306465 5.62011 1.61574 0.330237 0.638082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.586915 0.461619 0 0.0772968 0.15771

CAGE analysis