Hb_000739_290

Information

Type -
Description -
Location Contig739: 259503-261789
Sequence    

Annotation

kegg
ID rcu:RCOM_1612550
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002511745.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q50EK3
description Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1
trembl
ID B9RDF6
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1612550 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 704c1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56303: 259634-260464 , PASA_asmbl_56304: 260932-261610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_290 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_005228_100 0.1406197745 - - -
3 Hb_000753_210 0.1442399856 - - l-asparaginase, putative [Ricinus communis]
4 Hb_029388_040 0.1639499673 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
5 Hb_002374_440 0.1720869073 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000212_130 0.1796464223 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000771_160 0.1813555591 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
8 Hb_001946_360 0.1832306769 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_004206_040 0.1878829591 - - cytochrome P450, putative [Ricinus communis]
10 Hb_002405_020 0.1884906943 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
11 Hb_000619_070 0.1895270369 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
12 Hb_006275_050 0.1897331487 - - CP3 [Hevea brasiliensis]
13 Hb_000140_150 0.1950325479 - - -
14 Hb_000317_080 0.1965271675 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
15 Hb_004097_020 0.1970488725 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000185_090 0.1984694331 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
17 Hb_000608_340 0.2006563091 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
18 Hb_000352_130 0.2011645344 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
19 Hb_006846_090 0.2016576861 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
20 Hb_000206_130 0.2040182775 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000739_290 Hb_000739_290 Hb_005228_100 Hb_005228_100 Hb_000739_290--Hb_005228_100 Hb_000753_210 Hb_000753_210 Hb_000739_290--Hb_000753_210 Hb_029388_040 Hb_029388_040 Hb_000739_290--Hb_029388_040 Hb_002374_440 Hb_002374_440 Hb_000739_290--Hb_002374_440 Hb_000212_130 Hb_000212_130 Hb_000739_290--Hb_000212_130 Hb_000771_160 Hb_000771_160 Hb_000739_290--Hb_000771_160 Hb_005228_100--Hb_002374_440 Hb_005228_100--Hb_029388_040 Hb_005228_100--Hb_000771_160 Hb_011671_330 Hb_011671_330 Hb_005228_100--Hb_011671_330 Hb_004374_050 Hb_004374_050 Hb_005228_100--Hb_004374_050 Hb_001178_060 Hb_001178_060 Hb_000753_210--Hb_001178_060 Hb_004206_040 Hb_004206_040 Hb_000753_210--Hb_004206_040 Hb_006275_050 Hb_006275_050 Hb_000753_210--Hb_006275_050 Hb_003050_090 Hb_003050_090 Hb_000753_210--Hb_003050_090 Hb_012760_200 Hb_012760_200 Hb_000753_210--Hb_012760_200 Hb_029388_040--Hb_002374_440 Hb_012340_020 Hb_012340_020 Hb_029388_040--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_029388_040--Hb_106321_030 Hb_000152_560 Hb_000152_560 Hb_029388_040--Hb_000152_560 Hb_002168_020 Hb_002168_020 Hb_029388_040--Hb_002168_020 Hb_002374_440--Hb_012340_020 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_000792_110 Hb_000792_110 Hb_000212_130--Hb_000792_110 Hb_000619_070 Hb_000619_070 Hb_000212_130--Hb_000619_070 Hb_101151_020 Hb_101151_020 Hb_000212_130--Hb_101151_020 Hb_000608_340 Hb_000608_340 Hb_000212_130--Hb_000608_340 Hb_003299_080 Hb_003299_080 Hb_000212_130--Hb_003299_080 Hb_035360_010 Hb_035360_010 Hb_000212_130--Hb_035360_010 Hb_002405_020 Hb_002405_020 Hb_000771_160--Hb_002405_020 Hb_113216_010 Hb_113216_010 Hb_000771_160--Hb_113216_010 Hb_004669_040 Hb_004669_040 Hb_000771_160--Hb_004669_040 Hb_000185_090 Hb_000185_090 Hb_000771_160--Hb_000185_090 Hb_001582_030 Hb_001582_030 Hb_000771_160--Hb_001582_030 Hb_009615_110 Hb_009615_110 Hb_000771_160--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8862 38.0044 0.0401822 1.32119 176.344 81.7185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9842 11.7974 16.8712 21.2692 0.158315

CAGE analysis