Hb_000739_300

Information

Type -
Description -
Location Contig739: 262031-264438
Sequence    

Annotation

kegg
ID rcu:RCOM_1612570
description hypothetical protein
nr
ID XP_012083538.1
description PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JY00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14498 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56305: 262258-264409 , PASA_asmbl_56306: 262258-264106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_300 0.0 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
2 Hb_000419_020 0.0881523497 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000136_260 0.0933737617 - - 40S ribosomal protein S5A [Hevea brasiliensis]
4 Hb_010423_030 0.0934101502 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
5 Hb_000948_160 0.0957029452 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
6 Hb_000099_150 0.0967383688 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
7 Hb_002271_010 0.0977920626 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
8 Hb_001691_140 0.1026952561 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
9 Hb_000847_060 0.1028524934 - - hypothetical protein [Jatropha curcas]
10 Hb_111036_010 0.1031717284 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
11 Hb_189216_020 0.1040148257 - - PREDICTED: translin [Jatropha curcas]
12 Hb_014109_040 0.1041201336 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
13 Hb_002534_120 0.1044569729 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
14 Hb_007747_050 0.1061096866 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
15 Hb_001470_030 0.108233657 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
16 Hb_004781_010 0.1087164765 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
17 Hb_001863_430 0.1117604768 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_004109_340 0.1119503881 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
19 Hb_004586_420 0.1127534251 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
20 Hb_001386_040 0.1144627143 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]

Gene co-expression network

sample Hb_000739_300 Hb_000739_300 Hb_000419_020 Hb_000419_020 Hb_000739_300--Hb_000419_020 Hb_000136_260 Hb_000136_260 Hb_000739_300--Hb_000136_260 Hb_010423_030 Hb_010423_030 Hb_000739_300--Hb_010423_030 Hb_000948_160 Hb_000948_160 Hb_000739_300--Hb_000948_160 Hb_000099_150 Hb_000099_150 Hb_000739_300--Hb_000099_150 Hb_002271_010 Hb_002271_010 Hb_000739_300--Hb_002271_010 Hb_007747_050 Hb_007747_050 Hb_000419_020--Hb_007747_050 Hb_000419_020--Hb_000136_260 Hb_000155_160 Hb_000155_160 Hb_000419_020--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_000538_120 Hb_000538_120 Hb_000136_260--Hb_000538_120 Hb_002078_140 Hb_002078_140 Hb_000136_260--Hb_002078_140 Hb_000136_260--Hb_000099_150 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_001470_030 Hb_001470_030 Hb_010423_030--Hb_001470_030 Hb_001030_020 Hb_001030_020 Hb_010423_030--Hb_001030_020 Hb_001278_100 Hb_001278_100 Hb_010423_030--Hb_001278_100 Hb_001123_060 Hb_001123_060 Hb_010423_030--Hb_001123_060 Hb_089032_030 Hb_089032_030 Hb_010423_030--Hb_089032_030 Hb_012022_040 Hb_012022_040 Hb_010423_030--Hb_012022_040 Hb_000431_170 Hb_000431_170 Hb_000948_160--Hb_000431_170 Hb_001386_040 Hb_001386_040 Hb_000948_160--Hb_001386_040 Hb_189216_020 Hb_189216_020 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_002994_030 Hb_002994_030 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120 Hb_001691_140 Hb_001691_140 Hb_000099_150--Hb_001691_140 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_000099_150--Hb_002078_140 Hb_002232_360 Hb_002232_360 Hb_002271_010--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002271_010--Hb_001671_100 Hb_002534_120 Hb_002534_120 Hb_002271_010--Hb_002534_120 Hb_002400_340 Hb_002400_340 Hb_002271_010--Hb_002400_340 Hb_111036_010 Hb_111036_010 Hb_002271_010--Hb_111036_010 Hb_000905_110 Hb_000905_110 Hb_002271_010--Hb_000905_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7809 17.7743 16.7921 18.0134 11.6878 16.2344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5921 46.3498 10.7849 28.3179 19.0684

CAGE analysis