Hb_000739_310

Information

Type -
Description -
Location Contig739: 266002-297395
Sequence    

Annotation

kegg
ID rcu:RCOM_1612580
description nucleotide binding protein, putative
nr
ID XP_012083536.1
description PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
swissprot
ID Q54U63
description BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=3 SV=2
trembl
ID B9RDF9
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1612580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56307: 266367-291117 , PASA_asmbl_56309: 291422-294257 , PASA_asmbl_56310: 294361-295917 , PASA_asmbl_56312: 297078-298057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_310 0.0 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
2 Hb_000707_050 0.0724330551 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
3 Hb_000832_020 0.0755352674 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
4 Hb_007545_030 0.0772333926 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024570_010 0.0786179975 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
6 Hb_000796_040 0.084572356 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001019_190 0.086017667 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004225_050 0.0869951148 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_003605_110 0.0885824468 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
10 Hb_012799_030 0.089532421 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
11 Hb_000352_190 0.0904120266 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
12 Hb_002095_010 0.091389657 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
13 Hb_028089_010 0.0916187967 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
14 Hb_028912_050 0.0922806136 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
15 Hb_000796_220 0.0940336003 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
16 Hb_001696_010 0.0969674608 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
17 Hb_005054_100 0.0993285374 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
18 Hb_002740_180 0.0993477784 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002942_100 0.0995545009 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
20 Hb_000261_350 0.0997943265 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000739_310 Hb_000739_310 Hb_000707_050 Hb_000707_050 Hb_000739_310--Hb_000707_050 Hb_000832_020 Hb_000832_020 Hb_000739_310--Hb_000832_020 Hb_007545_030 Hb_007545_030 Hb_000739_310--Hb_007545_030 Hb_024570_010 Hb_024570_010 Hb_000739_310--Hb_024570_010 Hb_000796_040 Hb_000796_040 Hb_000739_310--Hb_000796_040 Hb_001019_190 Hb_001019_190 Hb_000739_310--Hb_001019_190 Hb_086639_040 Hb_086639_040 Hb_000707_050--Hb_086639_040 Hb_000574_390 Hb_000574_390 Hb_000707_050--Hb_000574_390 Hb_000707_050--Hb_000832_020 Hb_006711_100 Hb_006711_100 Hb_000707_050--Hb_006711_100 Hb_013405_030 Hb_013405_030 Hb_000707_050--Hb_013405_030 Hb_002217_300 Hb_002217_300 Hb_000832_020--Hb_002217_300 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040 Hb_000796_220 Hb_000796_220 Hb_000832_020--Hb_000796_220 Hb_007545_030--Hb_024570_010 Hb_000261_350 Hb_000261_350 Hb_007545_030--Hb_000261_350 Hb_007545_030--Hb_001019_190 Hb_028089_010 Hb_028089_010 Hb_007545_030--Hb_028089_010 Hb_007545_030--Hb_000032_100 Hb_024570_010--Hb_028089_010 Hb_024570_010--Hb_001019_190 Hb_002374_240 Hb_002374_240 Hb_024570_010--Hb_002374_240 Hb_000819_080 Hb_000819_080 Hb_024570_010--Hb_000819_080 Hb_000853_210 Hb_000853_210 Hb_000796_040--Hb_000853_210 Hb_004228_010 Hb_004228_010 Hb_000796_040--Hb_004228_010 Hb_007416_160 Hb_007416_160 Hb_000796_040--Hb_007416_160 Hb_000009_600 Hb_000009_600 Hb_000796_040--Hb_000009_600 Hb_009503_030 Hb_009503_030 Hb_000796_040--Hb_009503_030 Hb_000116_500 Hb_000116_500 Hb_000796_040--Hb_000116_500 Hb_002681_070 Hb_002681_070 Hb_001019_190--Hb_002681_070 Hb_001019_190--Hb_000819_080 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_001019_190--Hb_000796_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.98473 5.91541 4.94287 6.9065 16.1724 13.523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.57107 7.39132 17.6941 9.80513 13.5931

CAGE analysis