Hb_000740_030

Information

Type -
Description -
Location Contig740: 18466-18732
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN64074.1
description hypothetical protein VITISV_038271 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C0J3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001238 PE=4 SV=1
Gene Ontology
ID GO:0000793
description transcription factor as1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_030 0.0 - - hypothetical protein VITISV_038271 [Vitis vinifera]
2 Hb_038190_040 0.1931621272 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
3 Hb_000046_230 0.2386325228 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
4 Hb_004604_020 0.2463463188 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
5 Hb_011468_010 0.293514245 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
6 Hb_047923_020 0.2960659323 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_002588_020 0.3403216632 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
8 Hb_003581_160 0.3405416654 - - -
9 Hb_003117_050 0.3426783914 - - -
10 Hb_007943_010 0.3460711259 - - -
11 Hb_000905_150 0.3487260452 - - Cytochrome P450 [Theobroma cacao]
12 Hb_003793_050 0.3530437944 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
13 Hb_151497_010 0.3600290241 - - -
14 Hb_003392_010 0.3606881885 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_049827_010 0.3615281313 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
16 Hb_003793_020 0.3616740123 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006387_010 0.3625407123 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
18 Hb_001863_210 0.3650474441 - - -
19 Hb_185830_100 0.3655064484 - - -
20 Hb_002708_010 0.3660206857 - - -

Gene co-expression network

sample Hb_000740_030 Hb_000740_030 Hb_038190_040 Hb_038190_040 Hb_000740_030--Hb_038190_040 Hb_000046_230 Hb_000046_230 Hb_000740_030--Hb_000046_230 Hb_004604_020 Hb_004604_020 Hb_000740_030--Hb_004604_020 Hb_011468_010 Hb_011468_010 Hb_000740_030--Hb_011468_010 Hb_047923_020 Hb_047923_020 Hb_000740_030--Hb_047923_020 Hb_002588_020 Hb_002588_020 Hb_000740_030--Hb_002588_020 Hb_003392_010 Hb_003392_010 Hb_038190_040--Hb_003392_010 Hb_007943_010 Hb_007943_010 Hb_038190_040--Hb_007943_010 Hb_049827_010 Hb_049827_010 Hb_038190_040--Hb_049827_010 Hb_038190_040--Hb_000046_230 Hb_006387_010 Hb_006387_010 Hb_038190_040--Hb_006387_010 Hb_000046_230--Hb_004604_020 Hb_003581_160 Hb_003581_160 Hb_000046_230--Hb_003581_160 Hb_000046_230--Hb_002588_020 Hb_000046_230--Hb_011468_010 Hb_004604_020--Hb_047923_020 Hb_003793_020 Hb_003793_020 Hb_004604_020--Hb_003793_020 Hb_004041_070 Hb_004041_070 Hb_004604_020--Hb_004041_070 Hb_004044_060 Hb_004044_060 Hb_004604_020--Hb_004044_060 Hb_000009_260 Hb_000009_260 Hb_004604_020--Hb_000009_260 Hb_003117_050 Hb_003117_050 Hb_011468_010--Hb_003117_050 Hb_011468_010--Hb_003581_160 Hb_046198_020 Hb_046198_020 Hb_011468_010--Hb_046198_020 Hb_000796_060 Hb_000796_060 Hb_011468_010--Hb_000796_060 Hb_013394_090 Hb_013394_090 Hb_011468_010--Hb_013394_090 Hb_047923_020--Hb_003793_020 Hb_047923_020--Hb_004044_060 Hb_000438_040 Hb_000438_040 Hb_047923_020--Hb_000438_040 Hb_047923_020--Hb_004041_070 Hb_047923_020--Hb_000009_260 Hb_002588_020--Hb_003581_160 Hb_137914_010 Hb_137914_010 Hb_002588_020--Hb_137914_010 Hb_001491_060 Hb_001491_060 Hb_002588_020--Hb_001491_060 Hb_011344_100 Hb_011344_100 Hb_002588_020--Hb_011344_100 Hb_001269_280 Hb_001269_280 Hb_002588_020--Hb_001269_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.219656 0 0 0.457297 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.189604 0

CAGE analysis