Hb_000740_040

Information

Type -
Description -
Location Contig740: 19281-20628
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20930g
description POPTRDRAFT_555185; hypothetical protein
nr
ID XP_011025129.1
description PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GXY4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20930g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56354: 19199-20580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_040 0.0 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
2 Hb_001073_080 0.1189164669 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
3 Hb_118282_010 0.1357183484 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
4 Hb_001329_090 0.1382477757 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000005_110 0.1384321172 - - histone H2B1 [Hevea brasiliensis]
6 Hb_000035_240 0.1403111422 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003126_130 0.1448098539 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
8 Hb_000008_370 0.1465483717 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
9 Hb_001301_340 0.1491580849 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
10 Hb_002909_020 0.1521715575 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
11 Hb_154038_020 0.1530085706 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
12 Hb_000390_090 0.1535767465 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
13 Hb_068194_010 0.1565914898 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
14 Hb_007894_050 0.1571282767 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
15 Hb_003556_030 0.1612124463 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
16 Hb_001450_030 0.1614879613 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
17 Hb_000905_120 0.1643010287 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
18 Hb_003077_150 0.1651027259 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
19 Hb_030627_070 0.1675793482 - - histone H4 [Zea mays]
20 Hb_006445_020 0.1679366452 - - hypothetical protein L484_026741 [Morus notabilis]

Gene co-expression network

sample Hb_000740_040 Hb_000740_040 Hb_001073_080 Hb_001073_080 Hb_000740_040--Hb_001073_080 Hb_118282_010 Hb_118282_010 Hb_000740_040--Hb_118282_010 Hb_001329_090 Hb_001329_090 Hb_000740_040--Hb_001329_090 Hb_000005_110 Hb_000005_110 Hb_000740_040--Hb_000005_110 Hb_000035_240 Hb_000035_240 Hb_000740_040--Hb_000035_240 Hb_003126_130 Hb_003126_130 Hb_000740_040--Hb_003126_130 Hb_007894_050 Hb_007894_050 Hb_001073_080--Hb_007894_050 Hb_000390_090 Hb_000390_090 Hb_001073_080--Hb_000390_090 Hb_001301_340 Hb_001301_340 Hb_001073_080--Hb_001301_340 Hb_001377_450 Hb_001377_450 Hb_001073_080--Hb_001377_450 Hb_000160_180 Hb_000160_180 Hb_001073_080--Hb_000160_180 Hb_000429_040 Hb_000429_040 Hb_001073_080--Hb_000429_040 Hb_000025_370 Hb_000025_370 Hb_118282_010--Hb_000025_370 Hb_011053_010 Hb_011053_010 Hb_118282_010--Hb_011053_010 Hb_006445_020 Hb_006445_020 Hb_118282_010--Hb_006445_020 Hb_002909_020 Hb_002909_020 Hb_118282_010--Hb_002909_020 Hb_118282_010--Hb_001073_080 Hb_003556_030 Hb_003556_030 Hb_001329_090--Hb_003556_030 Hb_003077_150 Hb_003077_150 Hb_001329_090--Hb_003077_150 Hb_001541_110 Hb_001541_110 Hb_001329_090--Hb_001541_110 Hb_001329_090--Hb_000035_240 Hb_000905_120 Hb_000905_120 Hb_001329_090--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_001329_090--Hb_000413_060 Hb_000345_460 Hb_000345_460 Hb_000005_110--Hb_000345_460 Hb_000364_170 Hb_000364_170 Hb_000005_110--Hb_000364_170 Hb_030627_070 Hb_030627_070 Hb_000005_110--Hb_030627_070 Hb_188281_030 Hb_188281_030 Hb_000005_110--Hb_188281_030 Hb_001221_030 Hb_001221_030 Hb_000005_110--Hb_001221_030 Hb_000035_240--Hb_001301_340 Hb_001946_140 Hb_001946_140 Hb_000035_240--Hb_001946_140 Hb_000035_240--Hb_000390_090 Hb_000008_370 Hb_000008_370 Hb_000035_240--Hb_000008_370 Hb_009252_060 Hb_009252_060 Hb_000035_240--Hb_009252_060 Hb_003126_130--Hb_007894_050 Hb_003126_130--Hb_001377_450 Hb_003126_130--Hb_001073_080 Hb_003126_130--Hb_002909_020 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_000796_010 Hb_000796_010 Hb_003126_130--Hb_000796_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4693 1.37943 29.7019 13.2461 2.06488 2.9627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5654 17.6328 6.46083 2.81475 9.20023

CAGE analysis