Hb_000740_070

Information

Type -
Description -
Location Contig740: 54361-56248
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56358: 55382-55808 , PASA_asmbl_56359: 55884-55985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_070 0.0 - - -
2 Hb_001474_030 0.0782172543 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
3 Hb_003656_160 0.0864475791 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
4 Hb_005701_040 0.0865671465 - - cellular nucleic acid binding protein, putative [Ricinus communis]
5 Hb_001504_150 0.0881091879 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
6 Hb_004678_020 0.0894982952 - - PREDICTED: protein YIF1B [Jatropha curcas]
7 Hb_007164_020 0.0912345413 - - hypothetical protein glysoja_025872 [Glycine soja]
8 Hb_001498_030 0.0945371739 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
9 Hb_000236_280 0.095749902 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
10 Hb_000359_330 0.0992089525 - - conserved hypothetical protein [Ricinus communis]
11 Hb_080147_030 0.0996053076 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
12 Hb_002133_030 0.0997549589 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
13 Hb_003878_140 0.1006821666 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
14 Hb_005725_070 0.1022890316 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004241_070 0.1045479228 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
16 Hb_000104_080 0.1054304349 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
17 Hb_000487_100 0.1068787729 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
18 Hb_004678_060 0.1071520362 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_023020_060 0.1071866871 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
20 Hb_004324_280 0.1076091697 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]

Gene co-expression network

sample Hb_000740_070 Hb_000740_070 Hb_001474_030 Hb_001474_030 Hb_000740_070--Hb_001474_030 Hb_003656_160 Hb_003656_160 Hb_000740_070--Hb_003656_160 Hb_005701_040 Hb_005701_040 Hb_000740_070--Hb_005701_040 Hb_001504_150 Hb_001504_150 Hb_000740_070--Hb_001504_150 Hb_004678_020 Hb_004678_020 Hb_000740_070--Hb_004678_020 Hb_007164_020 Hb_007164_020 Hb_000740_070--Hb_007164_020 Hb_002276_050 Hb_002276_050 Hb_001474_030--Hb_002276_050 Hb_073171_080 Hb_073171_080 Hb_001474_030--Hb_073171_080 Hb_000236_280 Hb_000236_280 Hb_001474_030--Hb_000236_280 Hb_002133_030 Hb_002133_030 Hb_001474_030--Hb_002133_030 Hb_001396_290 Hb_001396_290 Hb_001474_030--Hb_001396_290 Hb_004678_060 Hb_004678_060 Hb_003656_160--Hb_004678_060 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_002007_350 Hb_002007_350 Hb_003656_160--Hb_002007_350 Hb_002400_180 Hb_002400_180 Hb_003656_160--Hb_002400_180 Hb_005701_040--Hb_001504_150 Hb_005701_040--Hb_004678_020 Hb_012305_070 Hb_012305_070 Hb_005701_040--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_005701_040--Hb_005914_230 Hb_023001_020 Hb_023001_020 Hb_005701_040--Hb_023001_020 Hb_005701_040--Hb_003656_160 Hb_000666_110 Hb_000666_110 Hb_001504_150--Hb_000666_110 Hb_019962_030 Hb_019962_030 Hb_001504_150--Hb_019962_030 Hb_001504_150--Hb_007164_020 Hb_000205_120 Hb_000205_120 Hb_001504_150--Hb_000205_120 Hb_000085_240 Hb_000085_240 Hb_001504_150--Hb_000085_240 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_010222_080 Hb_010222_080 Hb_004678_020--Hb_010222_080 Hb_004678_020--Hb_023001_020 Hb_002942_220 Hb_002942_220 Hb_004678_020--Hb_002942_220 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_001898_230 Hb_001898_230 Hb_007164_020--Hb_001898_230 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.7066 24.429 16.8357 9.70015 46.6837 36.276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8814 18.2373 20.0649 8.45655 4.90495

CAGE analysis