Hb_000740_090

Information

Type -
Description -
Location Contig740: 69818-72351
Sequence    

Annotation

kegg
ID rcu:RCOM_0343550
description hypothetical protein
nr
ID XP_002523418.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBP9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0343550 PE=4 SV=1
Gene Ontology
ID GO:0016874
description trna-splicing ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001053_210 0.0720401587 - - -
3 Hb_003430_080 0.0977916111 - - zinc finger protein, putative [Ricinus communis]
4 Hb_147245_010 0.1213210066 - - casein kinase, putative [Ricinus communis]
5 Hb_001545_130 0.1245626512 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
6 Hb_000940_210 0.124688404 - - cyclophilin [Hevea brasiliensis]
7 Hb_034507_060 0.1256982196 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
8 Hb_023226_030 0.1276814734 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
9 Hb_002374_270 0.1299055838 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000134_120 0.1332943362 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
11 Hb_000003_030 0.1335624292 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000581_030 0.1360765812 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005694_180 0.1366505337 - - PREDICTED: cytochrome b5 [Jatropha curcas]
14 Hb_000926_340 0.1367804059 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_002235_060 0.137665305 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
16 Hb_011457_130 0.1405274452 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
17 Hb_000424_030 0.1414889027 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001009_150 0.1431061346 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
19 Hb_006829_070 0.1443443273 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
20 Hb_010050_020 0.1449191842 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]

Gene co-expression network

sample Hb_000740_090 Hb_000740_090 Hb_001053_210 Hb_001053_210 Hb_000740_090--Hb_001053_210 Hb_003430_080 Hb_003430_080 Hb_000740_090--Hb_003430_080 Hb_147245_010 Hb_147245_010 Hb_000740_090--Hb_147245_010 Hb_001545_130 Hb_001545_130 Hb_000740_090--Hb_001545_130 Hb_000940_210 Hb_000940_210 Hb_000740_090--Hb_000940_210 Hb_034507_060 Hb_034507_060 Hb_000740_090--Hb_034507_060 Hb_001053_210--Hb_000940_210 Hb_001053_210--Hb_003430_080 Hb_023226_030 Hb_023226_030 Hb_001053_210--Hb_023226_030 Hb_001053_210--Hb_147245_010 Hb_011457_130 Hb_011457_130 Hb_001053_210--Hb_011457_130 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_000003_030 Hb_000003_030 Hb_003430_080--Hb_000003_030 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_002235_060 Hb_002235_060 Hb_147245_010--Hb_002235_060 Hb_147245_010--Hb_001545_130 Hb_007537_030 Hb_007537_030 Hb_147245_010--Hb_007537_030 Hb_000928_120 Hb_000928_120 Hb_147245_010--Hb_000928_120 Hb_004109_050 Hb_004109_050 Hb_147245_010--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_147245_010--Hb_000152_710 Hb_004218_130 Hb_004218_130 Hb_001545_130--Hb_004218_130 Hb_001545_130--Hb_000003_030 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_000940_210--Hb_003430_080 Hb_034507_060--Hb_023226_030 Hb_012760_090 Hb_012760_090 Hb_034507_060--Hb_012760_090 Hb_034507_060--Hb_005694_180 Hb_003710_020 Hb_003710_020 Hb_034507_060--Hb_003710_020 Hb_034507_060--Hb_004218_130 Hb_010050_020 Hb_010050_020 Hb_034507_060--Hb_010050_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0115 26.5721 37.0216 85.3697 5.46276 9.00213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1603 8.67989 2.77967 26.8235 16.8895

CAGE analysis