Hb_000740_110

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig740: 123957-127842
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09570g
description POPTRDRAFT_576722; hypothetical protein
nr
ID KDP42062.1
description hypothetical protein JCGZ_01850 [Jatropha curcas]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID A0A067L0V4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01850 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56367: 123535-123985 , PASA_asmbl_56368: 125649-128831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_110 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
2 Hb_156850_070 0.0922429176 - - conserved hypothetical protein [Ricinus communis]
3 Hb_089140_030 0.0986346589 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
4 Hb_000976_040 0.1080686095 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
5 Hb_008143_070 0.1089234416 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
6 Hb_006588_150 0.1101419802 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
7 Hb_005214_090 0.1112668735 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
8 Hb_000327_340 0.1121725144 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
9 Hb_005143_030 0.1142897442 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
10 Hb_000270_760 0.1162466139 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
11 Hb_029142_010 0.1167711672 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
12 Hb_001900_110 0.1168240747 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
13 Hb_022400_010 0.1179007791 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
14 Hb_011716_090 0.1181609223 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
15 Hb_000244_220 0.1223574786 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_000836_270 0.1232252691 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
17 Hb_008177_030 0.1233251649 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000200_280 0.1255287741 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
19 Hb_000369_130 0.1255462831 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
20 Hb_002007_240 0.1257139737 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]

Gene co-expression network

sample Hb_000740_110 Hb_000740_110 Hb_156850_070 Hb_156850_070 Hb_000740_110--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_000740_110--Hb_089140_030 Hb_000976_040 Hb_000976_040 Hb_000740_110--Hb_000976_040 Hb_008143_070 Hb_008143_070 Hb_000740_110--Hb_008143_070 Hb_006588_150 Hb_006588_150 Hb_000740_110--Hb_006588_150 Hb_005214_090 Hb_005214_090 Hb_000740_110--Hb_005214_090 Hb_000622_250 Hb_000622_250 Hb_156850_070--Hb_000622_250 Hb_156850_070--Hb_000976_040 Hb_005143_030 Hb_005143_030 Hb_156850_070--Hb_005143_030 Hb_156850_070--Hb_005214_090 Hb_000627_180 Hb_000627_180 Hb_156850_070--Hb_000627_180 Hb_000200_280 Hb_000200_280 Hb_089140_030--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_089140_030--Hb_011716_090 Hb_089140_030--Hb_005214_090 Hb_001575_010 Hb_001575_010 Hb_089140_030--Hb_001575_010 Hb_089140_030--Hb_000627_180 Hb_000853_120 Hb_000853_120 Hb_000976_040--Hb_000853_120 Hb_000976_040--Hb_000200_280 Hb_011512_090 Hb_011512_090 Hb_000976_040--Hb_011512_090 Hb_000640_130 Hb_000640_130 Hb_000976_040--Hb_000640_130 Hb_000976_040--Hb_005143_030 Hb_001055_030 Hb_001055_030 Hb_008143_070--Hb_001055_030 Hb_008143_070--Hb_000622_250 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_002876_290 Hb_002876_290 Hb_006588_150--Hb_002876_290 Hb_001369_440 Hb_001369_440 Hb_006588_150--Hb_001369_440 Hb_003211_010 Hb_003211_010 Hb_006588_150--Hb_003211_010 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_006588_150--Hb_005214_090 Hb_000856_310 Hb_000856_310 Hb_005214_090--Hb_000856_310 Hb_000244_220 Hb_000244_220 Hb_005214_090--Hb_000244_220 Hb_005214_090--Hb_001575_010 Hb_005214_090--Hb_000627_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2549 28.6627 2.52317 15.7073 17.8637 28.9072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7247 7.26886 11.9083 27.6779 6.46643

CAGE analysis