Hb_000740_120

Information

Type -
Description -
Location Contig740: 128716-131643
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56368: 125649-128831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_120 0.0 - - -
2 Hb_011206_020 0.2322344925 - - -
3 Hb_052402_010 0.2484735098 - - -
4 Hb_131652_010 0.2660674487 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
5 Hb_033044_010 0.2720216803 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]
6 Hb_002942_180 0.2747967164 - - phosphate transporter [Manihot esculenta]
7 Hb_130367_010 0.293420183 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
8 Hb_020532_010 0.302797741 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
9 Hb_021068_030 0.3110854325 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
10 Hb_022891_010 0.3194882775 - - chitinase-like protein [Hevea brasiliensis]
11 Hb_002815_070 0.3265122011 - - hypothetical protein PHAVU_005G048300g [Phaseolus vulgaris]
12 Hb_079212_010 0.3303440213 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007188_030 0.3328588334 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
14 Hb_000098_300 0.3334178734 - - -
15 Hb_113034_010 0.3360056647 - - -
16 Hb_005318_020 0.3361946592 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
17 Hb_017462_010 0.3461819499 - - -
18 Hb_006198_090 0.3465205387 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
19 Hb_141296_010 0.350012726 - - -
20 Hb_079978_010 0.3504599327 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000740_120 Hb_000740_120 Hb_011206_020 Hb_011206_020 Hb_000740_120--Hb_011206_020 Hb_052402_010 Hb_052402_010 Hb_000740_120--Hb_052402_010 Hb_131652_010 Hb_131652_010 Hb_000740_120--Hb_131652_010 Hb_033044_010 Hb_033044_010 Hb_000740_120--Hb_033044_010 Hb_002942_180 Hb_002942_180 Hb_000740_120--Hb_002942_180 Hb_130367_010 Hb_130367_010 Hb_000740_120--Hb_130367_010 Hb_000098_300 Hb_000098_300 Hb_011206_020--Hb_000098_300 Hb_068014_010 Hb_068014_010 Hb_011206_020--Hb_068014_010 Hb_011206_020--Hb_052402_010 Hb_007083_020 Hb_007083_020 Hb_011206_020--Hb_007083_020 Hb_011206_020--Hb_131652_010 Hb_169170_010 Hb_169170_010 Hb_052402_010--Hb_169170_010 Hb_005318_020 Hb_005318_020 Hb_052402_010--Hb_005318_020 Hb_000248_030 Hb_000248_030 Hb_052402_010--Hb_000248_030 Hb_177103_010 Hb_177103_010 Hb_052402_010--Hb_177103_010 Hb_000248_010 Hb_000248_010 Hb_052402_010--Hb_000248_010 Hb_131652_010--Hb_002942_180 Hb_008226_110 Hb_008226_110 Hb_131652_010--Hb_008226_110 Hb_131652_010--Hb_000098_300 Hb_005392_100 Hb_005392_100 Hb_131652_010--Hb_005392_100 Hb_006971_080 Hb_006971_080 Hb_131652_010--Hb_006971_080 Hb_033044_010--Hb_002942_180 Hb_033044_010--Hb_131652_010 Hb_033044_010--Hb_011206_020 Hb_033044_010--Hb_052402_010 Hb_001104_090 Hb_001104_090 Hb_033044_010--Hb_001104_090 Hb_002942_180--Hb_008226_110 Hb_020532_010 Hb_020532_010 Hb_002942_180--Hb_020532_010 Hb_002942_180--Hb_006971_080 Hb_002942_180--Hb_005392_100 Hb_002267_120 Hb_002267_120 Hb_002942_180--Hb_002267_120 Hb_022891_010 Hb_022891_010 Hb_130367_010--Hb_022891_010 Hb_006910_050 Hb_006910_050 Hb_130367_010--Hb_006910_050 Hb_002815_050 Hb_002815_050 Hb_130367_010--Hb_002815_050 Hb_007188_030 Hb_007188_030 Hb_130367_010--Hb_007188_030 Hb_003030_040 Hb_003030_040 Hb_130367_010--Hb_003030_040 Hb_001089_080 Hb_001089_080 Hb_130367_010--Hb_001089_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.32585 0 6.55225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.548417 0 1.13722 3.04831 0

CAGE analysis