Hb_000740_130

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig740: 131734-135324
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13340g
description POPTRDRAFT_569041; hypothetical protein
nr
ID XP_012067050.1
description PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID A0A067L488
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01851 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_130 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
2 Hb_182021_010 0.09211428 - - sucrose transporter 4 [Hevea brasiliensis]
3 Hb_000844_100 0.1006539463 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
4 Hb_088916_010 0.1045932441 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
5 Hb_132515_010 0.1167032248 - - phosphoprotein phosphatase, putative [Ricinus communis]
6 Hb_054865_030 0.1220147126 - - -
7 Hb_008692_010 0.1229852746 - - putative polyol transported protein 2 [Hevea brasiliensis]
8 Hb_001611_010 0.127147728 - - scab resistance family protein [Populus trichocarpa]
9 Hb_009785_010 0.1275441612 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
10 Hb_002122_040 0.1298129099 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000920_360 0.1356233057 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
12 Hb_004884_200 0.1382147379 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
13 Hb_002551_090 0.1384130065 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
14 Hb_008140_060 0.1391307579 - - Cytochrome P450, putative [Theobroma cacao]
15 Hb_000086_370 0.1407599867 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
16 Hb_007894_260 0.1411461778 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_003060_080 0.1412499241 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
18 Hb_001105_200 0.1438213379 - - catalytic, putative [Ricinus communis]
19 Hb_009642_010 0.1447818207 - - Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_014037_010 0.1469412804 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]

Gene co-expression network

sample Hb_000740_130 Hb_000740_130 Hb_182021_010 Hb_182021_010 Hb_000740_130--Hb_182021_010 Hb_000844_100 Hb_000844_100 Hb_000740_130--Hb_000844_100 Hb_088916_010 Hb_088916_010 Hb_000740_130--Hb_088916_010 Hb_132515_010 Hb_132515_010 Hb_000740_130--Hb_132515_010 Hb_054865_030 Hb_054865_030 Hb_000740_130--Hb_054865_030 Hb_008692_010 Hb_008692_010 Hb_000740_130--Hb_008692_010 Hb_182021_010--Hb_000844_100 Hb_009785_010 Hb_009785_010 Hb_182021_010--Hb_009785_010 Hb_182021_010--Hb_088916_010 Hb_002551_090 Hb_002551_090 Hb_182021_010--Hb_002551_090 Hb_012807_060 Hb_012807_060 Hb_182021_010--Hb_012807_060 Hb_008140_060 Hb_008140_060 Hb_000844_100--Hb_008140_060 Hb_001158_080 Hb_001158_080 Hb_000844_100--Hb_001158_080 Hb_002173_060 Hb_002173_060 Hb_000844_100--Hb_002173_060 Hb_094637_010 Hb_094637_010 Hb_000844_100--Hb_094637_010 Hb_001838_050 Hb_001838_050 Hb_088916_010--Hb_001838_050 Hb_088916_010--Hb_008140_060 Hb_000920_360 Hb_000920_360 Hb_088916_010--Hb_000920_360 Hb_001105_200 Hb_001105_200 Hb_088916_010--Hb_001105_200 Hb_132515_010--Hb_054865_030 Hb_018212_020 Hb_018212_020 Hb_132515_010--Hb_018212_020 Hb_064482_010 Hb_064482_010 Hb_132515_010--Hb_064482_010 Hb_003060_080 Hb_003060_080 Hb_132515_010--Hb_003060_080 Hb_006326_030 Hb_006326_030 Hb_132515_010--Hb_006326_030 Hb_006120_030 Hb_006120_030 Hb_054865_030--Hb_006120_030 Hb_000917_120 Hb_000917_120 Hb_054865_030--Hb_000917_120 Hb_054865_030--Hb_003060_080 Hb_054865_030--Hb_064482_010 Hb_018591_050 Hb_018591_050 Hb_008692_010--Hb_018591_050 Hb_025526_010 Hb_025526_010 Hb_008692_010--Hb_025526_010 Hb_007894_260 Hb_007894_260 Hb_008692_010--Hb_007894_260 Hb_000101_360 Hb_000101_360 Hb_008692_010--Hb_000101_360 Hb_008692_010--Hb_003060_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.271005 8.2893 0.673265 3.31052 0.0864469 0.068038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0475909 0.0873826 0.0476886 15.6885 4.09506

CAGE analysis