Hb_000740_150

Information

Type -
Description -
Location Contig740: 147104-149099
Sequence    

Annotation

kegg
ID rcu:RCOM_0344410
description hypothetical protein
nr
ID XP_012067055.1
description PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01854 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56373: 148928-149064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_150 0.0 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
2 Hb_014508_010 0.1396661132 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
3 Hb_017439_010 0.1488474917 - - putative actin-97 protein [Linum usitatissimum]
4 Hb_001268_160 0.1669703284 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
5 Hb_003055_090 0.1679480087 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
6 Hb_001408_170 0.176747432 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
7 Hb_029977_020 0.1794933444 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
8 Hb_000206_230 0.1795977077 - - conserved hypothetical protein [Ricinus communis]
9 Hb_118939_010 0.1855310227 - - protein binding protein, putative [Ricinus communis]
10 Hb_001401_040 0.1869840595 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
11 Hb_002374_270 0.1915743114 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001597_050 0.192456029 - - -
13 Hb_011242_050 0.1927126143 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
14 Hb_031022_020 0.1943228497 - - -
15 Hb_000020_100 0.1984935453 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
16 Hb_089140_090 0.198846515 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
17 Hb_004109_210 0.1990642161 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
18 Hb_001250_130 0.2005033576 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
19 Hb_029253_010 0.2022876061 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
20 Hb_005332_040 0.2066172668 - - hypothetical protein RCOM_0530890 [Ricinus communis]

Gene co-expression network

sample Hb_000740_150 Hb_000740_150 Hb_014508_010 Hb_014508_010 Hb_000740_150--Hb_014508_010 Hb_017439_010 Hb_017439_010 Hb_000740_150--Hb_017439_010 Hb_001268_160 Hb_001268_160 Hb_000740_150--Hb_001268_160 Hb_003055_090 Hb_003055_090 Hb_000740_150--Hb_003055_090 Hb_001408_170 Hb_001408_170 Hb_000740_150--Hb_001408_170 Hb_029977_020 Hb_029977_020 Hb_000740_150--Hb_029977_020 Hb_014508_010--Hb_029977_020 Hb_004052_100 Hb_004052_100 Hb_014508_010--Hb_004052_100 Hb_014508_010--Hb_001408_170 Hb_133799_010 Hb_133799_010 Hb_014508_010--Hb_133799_010 Hb_001250_130 Hb_001250_130 Hb_014508_010--Hb_001250_130 Hb_002498_030 Hb_002498_030 Hb_017439_010--Hb_002498_030 Hb_001401_040 Hb_001401_040 Hb_017439_010--Hb_001401_040 Hb_017439_010--Hb_003055_090 Hb_017439_010--Hb_001268_160 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_000328_010 Hb_000328_010 Hb_017439_010--Hb_000328_010 Hb_001268_160--Hb_001408_170 Hb_000008_200 Hb_000008_200 Hb_001268_160--Hb_000008_200 Hb_010381_040 Hb_010381_040 Hb_001268_160--Hb_010381_040 Hb_008053_030 Hb_008053_030 Hb_001268_160--Hb_008053_030 Hb_001268_160--Hb_001401_040 Hb_003055_090--Hb_001401_040 Hb_003728_110 Hb_003728_110 Hb_003055_090--Hb_003728_110 Hb_003055_090--Hb_010889_010 Hb_003992_280 Hb_003992_280 Hb_003055_090--Hb_003992_280 Hb_003055_090--Hb_001268_160 Hb_001408_170--Hb_004052_100 Hb_001408_170--Hb_001401_040 Hb_001377_530 Hb_001377_530 Hb_001408_170--Hb_001377_530 Hb_001408_170--Hb_010381_040 Hb_011174_040 Hb_011174_040 Hb_001408_170--Hb_011174_040 Hb_005332_040 Hb_005332_040 Hb_029977_020--Hb_005332_040 Hb_000206_230 Hb_000206_230 Hb_029977_020--Hb_000206_230 Hb_010672_050 Hb_010672_050 Hb_029977_020--Hb_010672_050 Hb_029977_020--Hb_004052_100 Hb_003299_020 Hb_003299_020 Hb_029977_020--Hb_003299_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.374448 1.4698 6.88453 9.46967 0.105649 0.120151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.625098 2.9493 0.446862 1.11204 1.78602

CAGE analysis