Hb_000742_020

Information

Type -
Description -
Location Contig742: 13059-18734
Sequence    

Annotation

kegg
ID rcu:RCOM_1337990
description ARF GTPase activator, putative
nr
ID XP_002523190.1
description ARF GTPase activator, putative [Ricinus communis]
swissprot
ID Q8LFN9
description Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1
trembl
ID B9SB30
description ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_1337990 PE=4 SV=1
Gene Ontology
ID GO:0005096
description adp-ribosylation factor gtpase-activating protein agd12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56476: 13065-18716
cDNA
(Sanger)
(ID:Location)		 024_K04.ab1: 13065-16094 , 050_I12.ab1: 13065-16093

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_020 0.0 - - ARF GTPase activator, putative [Ricinus communis]
2 Hb_013394_050 0.0909406516 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
3 Hb_001609_040 0.0994394906 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
4 Hb_007441_080 0.1019765015 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
5 Hb_005993_010 0.1034337739 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
6 Hb_000069_640 0.1078393002 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
7 Hb_000244_170 0.1102923907 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
8 Hb_002110_100 0.1108609114 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
9 Hb_004088_040 0.1109495282 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
10 Hb_000197_020 0.1133181174 - - PREDICTED: protein RER1A [Jatropha curcas]
11 Hb_000705_230 0.113758947 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
12 Hb_004158_020 0.1142572713 - - Rab1 [Hevea brasiliensis]
13 Hb_001754_080 0.1168709002 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
14 Hb_000395_110 0.1190002804 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
15 Hb_000796_150 0.1222526882 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
16 Hb_011606_020 0.1228166791 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
17 Hb_001633_200 0.1235434966 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
18 Hb_121881_010 0.1252219404 - - hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
19 Hb_001904_050 0.1265275674 - - alpha-tubulin 1 [Hevea brasiliensis]
20 Hb_003305_040 0.1267012476 - - AP47/50p mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000742_020 Hb_000742_020 Hb_013394_050 Hb_013394_050 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_007441_080 Hb_007441_080 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_013394_050--Hb_000069_640 Hb_019181_030 Hb_019181_030 Hb_013394_050--Hb_019181_030 Hb_000197_020 Hb_000197_020 Hb_013394_050--Hb_000197_020 Hb_013394_050--Hb_000244_170 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120 Hb_001609_040--Hb_005993_010 Hb_001609_040--Hb_004055_120 Hb_001609_040--Hb_013394_050 Hb_001609_040--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_001609_040--Hb_000152_600 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_003602_060 Hb_003602_060 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030 Hb_185830_060 Hb_185830_060 Hb_005993_010--Hb_185830_060 Hb_005993_010--Hb_000152_600 Hb_005993_010--Hb_004055_120 Hb_005993_010--Hb_000069_640 Hb_000705_230 Hb_000705_230 Hb_005993_010--Hb_000705_230 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000603_160 Hb_000603_160 Hb_000069_640--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000069_640--Hb_005653_070 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_000069_640--Hb_000705_230 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_000062_330 Hb_000062_330 Hb_000244_170--Hb_000062_330 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000244_170--Hb_000197_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81976 4.58301 13.0203 24.0426 2.43109 4.56378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13657 9.08454 12.2619 5.50168 11.9782

CAGE analysis