Hb_000742_040

Information

Type -
Description -
Location Contig742: 47684-48652
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47090g
description POPTRDRAFT_177524; hypothetical protein
nr
ID XP_012075756.1
description PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
swissprot
ID Q9C942
description Caffeoylshikimate esterase OS=Arabidopsis thaliana GN=CSE PE=1 SV=1
trembl
ID B9GH12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s47090g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56478: 48236-48387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_040 0.0 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
2 Hb_124677_070 0.0379697194 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
3 Hb_002999_020 0.044878348 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
4 Hb_000796_110 0.0592625963 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
5 Hb_016734_110 0.0714509867 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
6 Hb_153258_030 0.0715642698 - - hypothetical protein RCOM_0853150 [Ricinus communis]
7 Hb_000802_040 0.0737531442 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
8 Hb_001416_120 0.0738775083 - - caspase, putative [Ricinus communis]
9 Hb_026196_020 0.0798141256 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_188742_010 0.0807920394 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
11 Hb_005666_010 0.0820695143 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
12 Hb_000815_010 0.0859891866 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
13 Hb_001623_560 0.0904421109 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
14 Hb_009662_040 0.0918819615 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
15 Hb_010327_040 0.0972629711 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
16 Hb_000666_040 0.098388967 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
17 Hb_001369_490 0.1013133564 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
18 Hb_090210_010 0.1071358767 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
19 Hb_004690_020 0.1073510638 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
20 Hb_004693_040 0.1092074463 - - -

Gene co-expression network

sample Hb_000742_040 Hb_000742_040 Hb_124677_070 Hb_124677_070 Hb_000742_040--Hb_124677_070 Hb_002999_020 Hb_002999_020 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_016734_110 Hb_016734_110 Hb_000742_040--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_000742_040--Hb_153258_030 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040 Hb_026196_020 Hb_026196_020 Hb_124677_070--Hb_026196_020 Hb_124677_070--Hb_000802_040 Hb_188742_010 Hb_188742_010 Hb_124677_070--Hb_188742_010 Hb_124677_070--Hb_002999_020 Hb_010327_040 Hb_010327_040 Hb_124677_070--Hb_010327_040 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_002999_020--Hb_016734_110 Hb_000796_110--Hb_153258_030 Hb_000796_110--Hb_001416_120 Hb_090210_010 Hb_090210_010 Hb_000796_110--Hb_090210_010 Hb_000934_120 Hb_000934_120 Hb_000796_110--Hb_000934_120 Hb_000666_040 Hb_000666_040 Hb_016734_110--Hb_000666_040 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150 Hb_153258_030--Hb_090210_010 Hb_153258_030--Hb_001496_150 Hb_153258_030--Hb_001416_120 Hb_000802_040--Hb_010327_040 Hb_000802_040--Hb_026196_020 Hb_000802_040--Hb_001416_120 Hb_000802_040--Hb_002999_020 Hb_004693_040 Hb_004693_040 Hb_000802_040--Hb_004693_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.057556 3.0077 9.84815 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0166844 0.507677

CAGE analysis