Hb_000742_110

Information

Type -
Description -
Location Contig742: 88956-96743
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16740g
description ATPase family protein
nr
ID KDP34927.1
description hypothetical protein JCGZ_09215 [Jatropha curcas]
swissprot
ID Q54PM7
description N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2
trembl
ID A0A067KFM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09215 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56480: 90444-93604 , PASA_asmbl_56482: 93611-96479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_110 0.0 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
2 Hb_010560_040 0.0639269506 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
3 Hb_003097_210 0.0977882392 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
4 Hb_181600_010 0.1214235538 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
5 Hb_155764_010 0.127341338 - - -
6 Hb_000865_070 0.1289289261 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
7 Hb_048476_050 0.1337379007 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
8 Hb_001700_020 0.133892027 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
9 Hb_000907_170 0.1346749233 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_007181_070 0.1378615357 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
11 Hb_000317_410 0.1394469702 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
12 Hb_000616_040 0.1396492544 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
13 Hb_001136_010 0.1423256775 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
14 Hb_002138_010 0.1423301965 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
15 Hb_000599_350 0.1429035803 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
16 Hb_000329_250 0.1435283822 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
17 Hb_012114_040 0.1452467715 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000010_470 0.1458506434 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
19 Hb_001688_020 0.1466010077 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
20 Hb_002842_020 0.1474832433 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000742_110 Hb_000742_110 Hb_010560_040 Hb_010560_040 Hb_000742_110--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000742_110--Hb_003097_210 Hb_181600_010 Hb_181600_010 Hb_000742_110--Hb_181600_010 Hb_155764_010 Hb_155764_010 Hb_000742_110--Hb_155764_010 Hb_000865_070 Hb_000865_070 Hb_000742_110--Hb_000865_070 Hb_048476_050 Hb_048476_050 Hb_000742_110--Hb_048476_050 Hb_010560_040--Hb_003097_210 Hb_010560_040--Hb_000865_070 Hb_010560_040--Hb_155764_010 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_003097_210--Hb_155764_010 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_003097_210--Hb_000865_070 Hb_181600_010--Hb_048476_050 Hb_181600_010--Hb_003097_210 Hb_001545_080 Hb_001545_080 Hb_181600_010--Hb_001545_080 Hb_181600_010--Hb_001688_020 Hb_181600_010--Hb_155764_010 Hb_000260_810 Hb_000260_810 Hb_181600_010--Hb_000260_810 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_000010_470 Hb_000010_470 Hb_155764_010--Hb_000010_470 Hb_000865_070--Hb_003226_280 Hb_000089_160 Hb_000089_160 Hb_000865_070--Hb_000089_160 Hb_000030_100 Hb_000030_100 Hb_000865_070--Hb_000030_100 Hb_000865_070--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_000865_070--Hb_002078_460 Hb_048476_050--Hb_116898_010 Hb_048476_050--Hb_155764_010 Hb_048476_050--Hb_000010_470 Hb_048476_050--Hb_003097_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15805 2.91118 1.22299 3.6792 4.84983 7.75838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5361 13.2115 12.969 14.8835 2.01729

CAGE analysis