Hb_000742_130

Information

Type -
Description -
Location Contig742: 109203-111731
Sequence    

Annotation

kegg
ID rcu:RCOM_1337350
description kinase, putative (EC:2.7.10.2)
nr
ID XP_012075612.1
description PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
swissprot
ID Q9SA72
description Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=3 SV=1
trembl
ID A0A067KFC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09214 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g30570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56483: 108434-108683 , PASA_asmbl_56484: 108830-109078 , PASA_asmbl_56486: 110340-110568 , PASA_asmbl_56487: 110603-112011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_130 0.0 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
2 Hb_000645_160 0.0790448811 - - protein translocase, putative [Ricinus communis]
3 Hb_002518_220 0.0805569926 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
4 Hb_000098_260 0.0882743207 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_006120_210 0.0913147415 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_092975_010 0.0916232198 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
7 Hb_000329_720 0.0945794583 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
8 Hb_003747_250 0.0962304474 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
9 Hb_000005_360 0.0991230655 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012539_100 0.1015887048 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
11 Hb_003266_090 0.1043526046 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
12 Hb_004634_030 0.1044303458 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002205_150 0.1051454143 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
14 Hb_032920_030 0.1062691157 - - signal transducer, putative [Ricinus communis]
15 Hb_000563_630 0.1079906456 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
16 Hb_043630_030 0.1087660219 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
17 Hb_000365_430 0.1110277323 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
18 Hb_002171_020 0.1116102606 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
19 Hb_009189_100 0.1134407138 - - PREDICTED: patellin-6 [Jatropha curcas]
20 Hb_001936_180 0.1137326012 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_130 Hb_000742_130 Hb_000645_160 Hb_000645_160 Hb_000742_130--Hb_000645_160 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_006120_210 Hb_006120_210 Hb_000742_130--Hb_006120_210 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_003266_090 Hb_003266_090 Hb_002518_220--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_002518_220--Hb_003581_050 Hb_043630_030 Hb_043630_030 Hb_002518_220--Hb_043630_030 Hb_002518_220--Hb_006120_210 Hb_012539_100 Hb_012539_100 Hb_002518_220--Hb_012539_100 Hb_000098_260--Hb_092975_010 Hb_002641_140 Hb_002641_140 Hb_000098_260--Hb_002641_140 Hb_000365_430 Hb_000365_430 Hb_000098_260--Hb_000365_430 Hb_000411_020 Hb_000411_020 Hb_000098_260--Hb_000411_020 Hb_003747_250 Hb_003747_250 Hb_006120_210--Hb_003747_250 Hb_000563_630 Hb_000563_630 Hb_006120_210--Hb_000563_630 Hb_002639_050 Hb_002639_050 Hb_006120_210--Hb_002639_050 Hb_001054_040 Hb_001054_040 Hb_006120_210--Hb_001054_040 Hb_002522_040 Hb_002522_040 Hb_092975_010--Hb_002522_040 Hb_092975_010--Hb_000329_720 Hb_002171_020 Hb_002171_020 Hb_092975_010--Hb_002171_020 Hb_004634_030 Hb_004634_030 Hb_092975_010--Hb_004634_030 Hb_009189_100 Hb_009189_100 Hb_000329_720--Hb_009189_100 Hb_000329_720--Hb_002171_020 Hb_000005_360 Hb_000005_360 Hb_000329_720--Hb_000005_360 Hb_000329_720--Hb_000365_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0538191 4.73686 7.48633 12.9576 0.097053 0.0634974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0348974 0.0961113 0.0261811 2.37701 4.14536

CAGE analysis