Hb_000742_260

Information

Type -
Description -
Location Contig742: 235826-237367
Sequence    

Annotation

kegg
ID rcu:RCOM_1336320
description hypothetical protein
nr
ID XP_002523173.1
description hypothetical protein RCOM_1336320 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB13
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1336320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56511: 235807-237044 , PASA_asmbl_56512: 237100-237680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_260 0.0 - - hypothetical protein RCOM_1336320 [Ricinus communis]
2 Hb_013691_060 0.0689638342 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
3 Hb_000365_190 0.1004413502 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
4 Hb_004143_050 0.1046731154 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
5 Hb_004218_290 0.1120206989 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
6 Hb_113396_010 0.1240216446 - - cytochrome P450, putative [Ricinus communis]
7 Hb_011101_010 0.1244478947 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
8 Hb_004282_040 0.1281222922 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
9 Hb_000638_180 0.1297891663 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
10 Hb_000024_020 0.132398053 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
11 Hb_004586_230 0.1332357722 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005694_150 0.1379175266 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
13 Hb_097634_010 0.1399010229 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
14 Hb_002004_010 0.1404341766 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
15 Hb_012395_260 0.1427624914 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
16 Hb_000201_070 0.1448721924 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
17 Hb_010267_030 0.1454348838 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
18 Hb_003209_040 0.1457982132 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
19 Hb_019026_030 0.1474964403 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
20 Hb_005618_010 0.1483819417 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]

Gene co-expression network

sample Hb_000742_260 Hb_000742_260 Hb_013691_060 Hb_013691_060 Hb_000742_260--Hb_013691_060 Hb_000365_190 Hb_000365_190 Hb_000742_260--Hb_000365_190 Hb_004143_050 Hb_004143_050 Hb_000742_260--Hb_004143_050 Hb_004218_290 Hb_004218_290 Hb_000742_260--Hb_004218_290 Hb_113396_010 Hb_113396_010 Hb_000742_260--Hb_113396_010 Hb_011101_010 Hb_011101_010 Hb_000742_260--Hb_011101_010 Hb_005694_150 Hb_005694_150 Hb_013691_060--Hb_005694_150 Hb_013691_060--Hb_000365_190 Hb_000325_070 Hb_000325_070 Hb_013691_060--Hb_000325_070 Hb_013691_060--Hb_113396_010 Hb_000375_150 Hb_000375_150 Hb_013691_060--Hb_000375_150 Hb_000365_190--Hb_113396_010 Hb_026048_030 Hb_026048_030 Hb_000365_190--Hb_026048_030 Hb_001310_080 Hb_001310_080 Hb_000365_190--Hb_001310_080 Hb_000365_190--Hb_011101_010 Hb_004586_230 Hb_004586_230 Hb_000365_190--Hb_004586_230 Hb_000245_270 Hb_000245_270 Hb_004143_050--Hb_000245_270 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_000506_130 Hb_000506_130 Hb_004143_050--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_004143_050--Hb_029238_020 Hb_004218_290--Hb_011101_010 Hb_123078_010 Hb_123078_010 Hb_004218_290--Hb_123078_010 Hb_004218_290--Hb_000365_190 Hb_004218_290--Hb_013691_060 Hb_002267_030 Hb_002267_030 Hb_004218_290--Hb_002267_030 Hb_113396_010--Hb_001310_080 Hb_002218_080 Hb_002218_080 Hb_113396_010--Hb_002218_080 Hb_113396_010--Hb_026048_030 Hb_000024_020 Hb_000024_020 Hb_113396_010--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_113396_010--Hb_004112_050 Hb_011101_010--Hb_123078_010 Hb_001587_220 Hb_001587_220 Hb_011101_010--Hb_001587_220 Hb_011101_010--Hb_002267_030 Hb_000252_190 Hb_000252_190 Hb_011101_010--Hb_000252_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.360759 96.6245 18.5924 68.8781 0.916256 0.48826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.48406 1.04728 2.10397 4.35921 20.4889

CAGE analysis