Hb_000742_270

Information

Type -
Description -
Location Contig742: 256115-260714
Sequence    

Annotation

kegg
ID rcu:RCOM_1336080
description sphingolipid fatty acid alpha hydroxylase
nr
ID XP_012075925.1
description PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
swissprot
ID O48916
description Fatty acid 2-hydroxylase 1 OS=Arabidopsis thaliana GN=FAH1 PE=1 SV=1
trembl
ID A0A067KS13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11137 PE=4 SV=1
Gene Ontology
ID GO:0016021
description fatty acid 2-hydroxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56514: 256120-260813 , PASA_asmbl_56516: 256443-256563 , PASA_asmbl_56517: 256257-256409
cDNA
(Sanger)
(ID:Location)		 008_M21.ab1: 256120-260125 , 010_G07.ab1: 256106-260139 , 012_B18.ab1: 256120-260385 , 014_L14.ab1: 256106-260105 , 015_F18.ab1: 256120-260046 , 016_I23.ab1: 256106-260389 , 021_P22.ab1: 256120-260126 , 023_N06.ab1: 256120-260044 , 026_F19.ab1: 256121-260069 , 028_D12.ab1: 256130-260048 , 041_M12.ab1: 256124-259048 , 044_D19.ab1: 256120-260381 , 045_D18.ab1: 256106-260384 , 045_O06.ab1: 256120-260106 , 051_K10.ab1: 256120-260377

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_270 0.0 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
2 Hb_001507_070 0.0854728121 - - conserved hypothetical protein [Ricinus communis]
3 Hb_148121_010 0.0960910647 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000032_040 0.0986131715 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
5 Hb_011004_010 0.1001235065 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
6 Hb_001268_080 0.1062201038 - - catalytic, putative [Ricinus communis]
7 Hb_024714_060 0.113773728 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
8 Hb_003371_100 0.1146986841 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_000175_610 0.1226485996 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
10 Hb_001006_180 0.1248991013 - - PREDICTED: endonuclease V-like [Jatropha curcas]
11 Hb_006831_030 0.1342560039 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
12 Hb_009265_060 0.1345933567 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
13 Hb_000260_580 0.1347268556 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001213_120 0.1355417541 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
15 Hb_078633_010 0.1383106477 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
16 Hb_048937_030 0.1402811297 - - hypothetical protein RCOM_0231790 [Ricinus communis]
17 Hb_000367_280 0.1406573974 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
18 Hb_000191_020 0.1414391389 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001762_060 0.1422307079 - - pantothenate kinase, putative [Ricinus communis]
20 Hb_005000_160 0.1456500665 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_270 Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_000742_270--Hb_001507_070 Hb_148121_010 Hb_148121_010 Hb_000742_270--Hb_148121_010 Hb_000032_040 Hb_000032_040 Hb_000742_270--Hb_000032_040 Hb_011004_010 Hb_011004_010 Hb_000742_270--Hb_011004_010 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_001507_070--Hb_011004_010 Hb_003371_100 Hb_003371_100 Hb_001507_070--Hb_003371_100 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_001507_070--Hb_000032_040 Hb_001741_090 Hb_001741_090 Hb_148121_010--Hb_001741_090 Hb_001035_040 Hb_001035_040 Hb_148121_010--Hb_001035_040 Hb_148121_010--Hb_001268_080 Hb_148121_010--Hb_000032_040 Hb_000032_040--Hb_011004_010 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120 Hb_000575_020 Hb_000575_020 Hb_011004_010--Hb_000575_020 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610 Hb_000367_280 Hb_000367_280 Hb_001268_080--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_001268_080--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_001268_080--Hb_078633_010 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030 Hb_004297_040 Hb_004297_040 Hb_001268_080--Hb_004297_040 Hb_024714_060--Hb_001006_180 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_024714_060--Hb_001762_060 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_024714_060--Hb_006831_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
310.758 19.9936 57.5714 139.018 93.5765 156.029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1171.83 784.704 1020.23 79.8651 40.2029

CAGE analysis