Hb_000742_280

Information

Type -
Description -
Location Contig742: 262051-264554
Sequence    

Annotation

kegg
ID rcu:RCOM_1335970
description ATP binding protein, putative
nr
ID XP_002523168.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB08
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1335970 PE=4 SV=1
Gene Ontology
ID GO:0044464
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56518: 261858-264291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_280 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_024074_010 0.1160148785 - - PREDICTED: cytochrome c [Jatropha curcas]
3 Hb_131181_010 0.1275459765 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
4 Hb_001114_080 0.1300858905 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
5 Hb_000317_070 0.1320581226 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
6 Hb_010560_030 0.1380011753 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
7 Hb_000069_700 0.1408036857 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
8 Hb_002304_160 0.1438261405 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
9 Hb_001096_090 0.1447758792 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
10 Hb_000087_130 0.1448915325 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
11 Hb_005391_030 0.1453081886 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
12 Hb_007441_300 0.1467478401 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000085_350 0.1469629563 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
14 Hb_007441_260 0.1471288254 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
15 Hb_004871_020 0.1480847894 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
16 Hb_001252_220 0.1491787298 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
17 Hb_003880_030 0.1494303146 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
18 Hb_026053_020 0.149448118 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
19 Hb_000302_140 0.149518696 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
20 Hb_000356_090 0.1496000459 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_280 Hb_000742_280 Hb_024074_010 Hb_024074_010 Hb_000742_280--Hb_024074_010 Hb_131181_010 Hb_131181_010 Hb_000742_280--Hb_131181_010 Hb_001114_080 Hb_001114_080 Hb_000742_280--Hb_001114_080 Hb_000317_070 Hb_000317_070 Hb_000742_280--Hb_000317_070 Hb_010560_030 Hb_010560_030 Hb_000742_280--Hb_010560_030 Hb_000069_700 Hb_000069_700 Hb_000742_280--Hb_000069_700 Hb_000302_140 Hb_000302_140 Hb_024074_010--Hb_000302_140 Hb_002260_010 Hb_002260_010 Hb_024074_010--Hb_002260_010 Hb_000731_190 Hb_000731_190 Hb_024074_010--Hb_000731_190 Hb_001053_140 Hb_001053_140 Hb_024074_010--Hb_001053_140 Hb_004057_010 Hb_004057_010 Hb_024074_010--Hb_004057_010 Hb_024074_010--Hb_131181_010 Hb_026053_020 Hb_026053_020 Hb_131181_010--Hb_026053_020 Hb_018133_020 Hb_018133_020 Hb_131181_010--Hb_018133_020 Hb_000160_180 Hb_000160_180 Hb_131181_010--Hb_000160_180 Hb_001279_080 Hb_001279_080 Hb_131181_010--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_131181_010--Hb_001318_260 Hb_001329_150 Hb_001329_150 Hb_131181_010--Hb_001329_150 Hb_000796_010 Hb_000796_010 Hb_001114_080--Hb_000796_010 Hb_001114_080--Hb_024074_010 Hb_000331_430 Hb_000331_430 Hb_001114_080--Hb_000331_430 Hb_007894_050 Hb_007894_050 Hb_001114_080--Hb_007894_050 Hb_066720_010 Hb_066720_010 Hb_001114_080--Hb_066720_010 Hb_004871_020 Hb_004871_020 Hb_000317_070--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_000317_070--Hb_007441_300 Hb_174865_010 Hb_174865_010 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_153544_010 Hb_153544_010 Hb_000317_070--Hb_153544_010 Hb_010560_030--Hb_001053_140 Hb_000327_380 Hb_000327_380 Hb_010560_030--Hb_000327_380 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_010560_030--Hb_000302_140 Hb_002303_060 Hb_002303_060 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130 Hb_001172_120 Hb_001172_120 Hb_000069_700--Hb_001172_120 Hb_001235_110 Hb_001235_110 Hb_000069_700--Hb_001235_110 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_007192_100 Hb_007192_100 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32663 0.902395 4.10251 2.06261 0.321868 0.976983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.08392 8.88736 3.50845 2.67011 2.12219

CAGE analysis