Hb_000742_290

Information

Type -
Description -
Location Contig742: 264838-280905
Sequence    

Annotation

kegg
ID rcu:RCOM_1335930
description Reticuline oxidase precursor, putative (EC:1.21.3.3)
nr
ID XP_002523164.1
description Reticuline oxidase precursor, putative [Ricinus communis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID A0A0E0HS69
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0008762
description tetrahydrocannabinolic acid synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56520: 275816-276211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_290 0.0 - - Reticuline oxidase precursor, putative [Ricinus communis]
2 Hb_004531_130 0.0756719162 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
3 Hb_001059_110 0.0962442982 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
4 Hb_000085_410 0.1071653139 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
5 Hb_010690_010 0.1151653069 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
6 Hb_001882_080 0.1247664787 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103324347 [Prunus mume]
7 Hb_000922_050 0.1253303444 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
8 Hb_000139_520 0.1295204422 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
9 Hb_000310_040 0.1323661391 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
10 Hb_050898_030 0.1324965348 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009070_010 0.1332860169 - - Spermidine synthase, putative [Ricinus communis]
12 Hb_000861_060 0.1349731329 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
13 Hb_000739_190 0.1354393278 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_007259_010 0.1364449399 - - hypothetical protein CISIN_1g0073972mg, partial [Citrus sinensis]
15 Hb_020738_010 0.1369377178 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
16 Hb_000300_190 0.13907008 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
17 Hb_002918_270 0.1409955632 - - PREDICTED: protein E6-like [Populus euphratica]
18 Hb_000227_300 0.141944803 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011574_020 0.1444336072 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
20 Hb_003992_280 0.1464431442 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]

Gene co-expression network

sample Hb_000742_290 Hb_000742_290 Hb_004531_130 Hb_004531_130 Hb_000742_290--Hb_004531_130 Hb_001059_110 Hb_001059_110 Hb_000742_290--Hb_001059_110 Hb_000085_410 Hb_000085_410 Hb_000742_290--Hb_000085_410 Hb_010690_010 Hb_010690_010 Hb_000742_290--Hb_010690_010 Hb_001882_080 Hb_001882_080 Hb_000742_290--Hb_001882_080 Hb_000922_050 Hb_000922_050 Hb_000742_290--Hb_000922_050 Hb_004531_130--Hb_010690_010 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_009070_010 Hb_009070_010 Hb_004531_130--Hb_009070_010 Hb_000861_060 Hb_000861_060 Hb_004531_130--Hb_000861_060 Hb_020738_010 Hb_020738_010 Hb_004531_130--Hb_020738_010 Hb_048476_130 Hb_048476_130 Hb_001059_110--Hb_048476_130 Hb_001059_110--Hb_004531_130 Hb_001059_110--Hb_000085_410 Hb_002026_050 Hb_002026_050 Hb_001059_110--Hb_002026_050 Hb_003992_020 Hb_003992_020 Hb_001059_110--Hb_003992_020 Hb_000085_410--Hb_000922_050 Hb_001110_060 Hb_001110_060 Hb_000085_410--Hb_001110_060 Hb_001408_080 Hb_001408_080 Hb_000085_410--Hb_001408_080 Hb_003427_070 Hb_003427_070 Hb_000085_410--Hb_003427_070 Hb_000085_410--Hb_004531_130 Hb_007259_010 Hb_007259_010 Hb_010690_010--Hb_007259_010 Hb_010690_010--Hb_001882_080 Hb_010690_010--Hb_020738_010 Hb_011574_020 Hb_011574_020 Hb_010690_010--Hb_011574_020 Hb_001882_080--Hb_007259_010 Hb_001882_080--Hb_004531_130 Hb_001882_080--Hb_011574_020 Hb_000139_520 Hb_000139_520 Hb_001882_080--Hb_000139_520 Hb_000922_050--Hb_003427_070 Hb_000922_050--Hb_001110_060 Hb_000684_110 Hb_000684_110 Hb_000922_050--Hb_000684_110 Hb_003175_120 Hb_003175_120 Hb_000922_050--Hb_003175_120 Hb_025194_070 Hb_025194_070 Hb_000922_050--Hb_025194_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142524 3.55869 8.82144 17.5436 0.0723568 0.0167529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161839 0.201105 0.335588 0.405871 2.69374

CAGE analysis