Hb_000743_040

Information

Type -
Description -
Location Contig743: 43082-46391
Sequence    

Annotation

kegg
ID rcu:RCOM_1447470
description ribosomal RNA methyltransferase, putative
nr
ID XP_002512920.1
description ribosomal RNA methyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH61
description Putative rRNA methyltransferase OS=Ricinus communis GN=RCOM_1447470 PE=3 SV=1
Gene Ontology
ID GO:0005730
description rrna methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56565: 43249-58936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000743_040 0.0 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
2 Hb_000329_090 0.0430198631 - - arginase, putative [Ricinus communis]
3 Hb_000600_070 0.0559473234 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
4 Hb_003428_070 0.0576086988 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
5 Hb_000567_050 0.0580060669 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
6 Hb_000072_350 0.0616767532 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
7 Hb_010381_060 0.0623766607 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
8 Hb_002042_140 0.0643018006 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
9 Hb_000160_290 0.0645267452 - - unnamed protein product [Vitis vinifera]
10 Hb_016898_010 0.0646470825 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
11 Hb_000320_200 0.0655779499 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
12 Hb_003044_020 0.0667427879 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
13 Hb_000714_050 0.0671055507 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
14 Hb_001417_050 0.0671780682 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
15 Hb_003952_150 0.0672390789 - - PREDICTED: cactin [Jatropha curcas]
16 Hb_000173_510 0.0684123922 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
17 Hb_000567_010 0.0689131088 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
18 Hb_000059_150 0.068970426 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
19 Hb_000283_070 0.0700436194 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
20 Hb_005494_020 0.0715619282 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]

Gene co-expression network

sample Hb_000743_040 Hb_000743_040 Hb_000329_090 Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_010381_060 Hb_010381_060 Hb_000743_040--Hb_010381_060 Hb_000714_050 Hb_000714_050 Hb_000329_090--Hb_000714_050 Hb_000329_090--Hb_000567_050 Hb_000320_200 Hb_000320_200 Hb_000329_090--Hb_000320_200 Hb_001235_200 Hb_001235_200 Hb_000329_090--Hb_001235_200 Hb_000329_090--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_000600_070--Hb_009535_020 Hb_000347_130 Hb_000347_130 Hb_000600_070--Hb_000347_130 Hb_000600_070--Hb_000567_050 Hb_000600_070--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000600_070--Hb_000023_190 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000567_050--Hb_000023_190 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_000567_050--Hb_010381_060 Hb_001502_060 Hb_001502_060 Hb_000072_350--Hb_001502_060 Hb_000072_350--Hb_000320_200 Hb_000529_260 Hb_000529_260 Hb_000072_350--Hb_000529_260 Hb_003952_150 Hb_003952_150 Hb_000072_350--Hb_003952_150 Hb_000072_350--Hb_000329_090 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.465 48.2362 19.4893 31.8247 79.1733 81.9487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.1361 26.8818 31.8178 38.6902 34.1863

CAGE analysis