Hb_000743_050

Information

Type -
Description -
Location Contig743: 56997-59298
Sequence    

Annotation

kegg
ID atr:s00018p00145570
description AMTR_s00018p00145570; hypothetical protein
nr
ID CBI37670.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q5BH88
description AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spb1 PE=3 SV=1
trembl
ID S8DMA2
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10656 PE=3 SV=1
Gene Ontology
ID GO:0005730
description adomet-dependent rrna methyltransferase spb1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56565: 43249-58936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000743_050 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000739_220 0.060723763 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
3 Hb_000158_100 0.0761835716 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000347_130 0.0773734674 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
5 Hb_001322_210 0.0798798986 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
6 Hb_081879_030 0.0818700792 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
7 Hb_025012_010 0.0862263814 - - PREDICTED: importin-4 [Vitis vinifera]
8 Hb_003623_030 0.0901379666 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
9 Hb_002028_170 0.0905453756 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
10 Hb_007904_220 0.0934089772 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
11 Hb_002551_070 0.0958090295 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
12 Hb_002974_060 0.0974891057 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
13 Hb_011716_020 0.0976721836 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
14 Hb_005205_020 0.0991925128 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
15 Hb_002471_210 0.0997973885 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
16 Hb_116929_010 0.1009804835 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
17 Hb_000136_060 0.1010968643 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
18 Hb_003966_030 0.1022328292 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
19 Hb_000780_220 0.1034398519 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
20 Hb_000600_070 0.1063474956 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000743_050 Hb_000743_050 Hb_000739_220 Hb_000739_220 Hb_000743_050--Hb_000739_220 Hb_000158_100 Hb_000158_100 Hb_000743_050--Hb_000158_100 Hb_000347_130 Hb_000347_130 Hb_000743_050--Hb_000347_130 Hb_001322_210 Hb_001322_210 Hb_000743_050--Hb_001322_210 Hb_081879_030 Hb_081879_030 Hb_000743_050--Hb_081879_030 Hb_025012_010 Hb_025012_010 Hb_000743_050--Hb_025012_010 Hb_000739_220--Hb_000347_130 Hb_000739_220--Hb_025012_010 Hb_000739_220--Hb_000158_100 Hb_000739_220--Hb_001322_210 Hb_000613_080 Hb_000613_080 Hb_000739_220--Hb_000613_080 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_002028_170 Hb_002028_170 Hb_000158_100--Hb_002028_170 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070 Hb_000780_220 Hb_000780_220 Hb_001322_210--Hb_000780_220 Hb_002291_070 Hb_002291_070 Hb_001322_210--Hb_002291_070 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_002471_210 Hb_002471_210 Hb_001322_210--Hb_002471_210 Hb_001322_210--Hb_000347_130 Hb_007849_020 Hb_007849_020 Hb_001322_210--Hb_007849_020 Hb_081879_030--Hb_000347_130 Hb_000436_040 Hb_000436_040 Hb_081879_030--Hb_000436_040 Hb_002903_080 Hb_002903_080 Hb_081879_030--Hb_002903_080 Hb_081879_030--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_081879_030--Hb_042487_010 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5146 15.9438 5.522 10.1213 29.0438 49.5776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5329 7.34875 17.4306 20.2116 14.1704

CAGE analysis