Hb_000748_030

Information

Type -
Description -
Location Contig748: 50260-55280
Sequence    

Annotation

kegg
ID rcu:RCOM_0696690
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002526652.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SJG2
description Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=3 SV=1
trembl
ID B9SKY3
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0696690 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable receptor-like protein kinase at2g42960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56739: 49807-55040 , PASA_asmbl_56740: 54063-54479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000748_030 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000853_200 0.0850222351 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
3 Hb_000477_100 0.0877525733 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
4 Hb_001454_230 0.091745098 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
5 Hb_004137_020 0.0917853559 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
6 Hb_003305_040 0.0937200364 - - AP47/50p mRNA family protein [Populus trichocarpa]
7 Hb_003529_030 0.0947878605 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
8 Hb_000705_230 0.095244177 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
9 Hb_008748_030 0.0989670569 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000046_500 0.1003040276 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
11 Hb_000252_100 0.1006673102 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
12 Hb_001051_070 0.1019494089 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
13 Hb_019181_040 0.1039868468 - - component of oligomeric golgi complex, putative [Ricinus communis]
14 Hb_003777_200 0.1061698989 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
15 Hb_000069_640 0.1071809103 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
16 Hb_043792_040 0.1076150207 - - hypothetical protein, partial [Rosa rugosa]
17 Hb_005504_050 0.1079575425 - - putative protein [Arabidopsis thaliana]
18 Hb_000023_300 0.1096191815 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
19 Hb_012262_030 0.1103867598 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
20 Hb_000140_380 0.1107564464 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]

Gene co-expression network

sample Hb_000748_030 Hb_000748_030 Hb_000853_200 Hb_000853_200 Hb_000748_030--Hb_000853_200 Hb_000477_100 Hb_000477_100 Hb_000748_030--Hb_000477_100 Hb_001454_230 Hb_001454_230 Hb_000748_030--Hb_001454_230 Hb_004137_020 Hb_004137_020 Hb_000748_030--Hb_004137_020 Hb_003305_040 Hb_003305_040 Hb_000748_030--Hb_003305_040 Hb_003529_030 Hb_003529_030 Hb_000748_030--Hb_003529_030 Hb_000853_200--Hb_000477_100 Hb_000505_150 Hb_000505_150 Hb_000853_200--Hb_000505_150 Hb_008748_030 Hb_008748_030 Hb_000853_200--Hb_008748_030 Hb_000012_310 Hb_000012_310 Hb_000853_200--Hb_000012_310 Hb_007416_210 Hb_007416_210 Hb_000853_200--Hb_007416_210 Hb_007481_010 Hb_007481_010 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_001252_090 Hb_001252_090 Hb_001454_230--Hb_001252_090 Hb_012262_030 Hb_012262_030 Hb_001454_230--Hb_012262_030 Hb_000703_190 Hb_000703_190 Hb_001454_230--Hb_000703_190 Hb_001454_230--Hb_000046_500 Hb_011214_160 Hb_011214_160 Hb_001454_230--Hb_011214_160 Hb_000023_300 Hb_000023_300 Hb_001454_230--Hb_000023_300 Hb_009296_080 Hb_009296_080 Hb_004137_020--Hb_009296_080 Hb_004137_020--Hb_008748_030 Hb_004137_020--Hb_000853_200 Hb_028928_010 Hb_028928_010 Hb_004137_020--Hb_028928_010 Hb_002272_030 Hb_002272_030 Hb_004137_020--Hb_002272_030 Hb_000060_050 Hb_000060_050 Hb_003305_040--Hb_000060_050 Hb_000252_100 Hb_000252_100 Hb_003305_040--Hb_000252_100 Hb_002110_100 Hb_002110_100 Hb_003305_040--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_000258_240 Hb_000258_240 Hb_003529_030--Hb_000258_240 Hb_000917_130 Hb_000917_130 Hb_003529_030--Hb_000917_130 Hb_003529_030--Hb_000477_100 Hb_003529_030--Hb_000060_050 Hb_004129_140 Hb_004129_140 Hb_003529_030--Hb_004129_140 Hb_005504_050 Hb_005504_050 Hb_003529_030--Hb_005504_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.64366 10.9337 12.8823 31.8206 9.14143 8.02151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.84934 12.189 19.7975 12.3647 13.6803

CAGE analysis