Hb_000748_070

Information

Type transcription factor
Description TF Family: WRKY
Location Contig748: 81087-83066
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22480g
description POPTRDRAFT_559484; hypothetical protein
nr
ID XP_002306743.1
description hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
swissprot
ID Q93WV4
description Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1
trembl
ID B9H823
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22480g PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 71

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000748_070 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
2 Hb_002057_010 0.1202087888 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_004195_240 0.1274060038 - - Peroxidase 72 precursor, putative [Ricinus communis]
4 Hb_148435_010 0.1303694856 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_004055_180 0.1321062344 - - cell wall invertase [Manihot esculenta]
6 Hb_000563_610 0.1389679662 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
7 Hb_001936_030 0.1411415186 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
8 Hb_000140_190 0.141224898 - - acc synthase, putative [Ricinus communis]
9 Hb_061195_010 0.1432446972 - - Galactose oxidase precursor, putative [Ricinus communis]
10 Hb_005000_040 0.1499907298 - - ACC oxidase ACCO2 [Manihot esculenta]
11 Hb_004774_060 0.1511236997 - - -
12 Hb_007044_070 0.1545694098 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
13 Hb_000347_550 0.1577366579 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
14 Hb_002248_020 0.1622938347 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
15 Hb_025469_040 0.1624316154 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
16 Hb_012239_080 0.1627089617 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
17 Hb_097908_010 0.1650457406 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
18 Hb_148914_010 0.1656319692 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_029510_110 0.1664000039 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
20 Hb_012796_050 0.1664209523 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000748_070 Hb_000748_070 Hb_002057_010 Hb_002057_010 Hb_000748_070--Hb_002057_010 Hb_004195_240 Hb_004195_240 Hb_000748_070--Hb_004195_240 Hb_148435_010 Hb_148435_010 Hb_000748_070--Hb_148435_010 Hb_004055_180 Hb_004055_180 Hb_000748_070--Hb_004055_180 Hb_000563_610 Hb_000563_610 Hb_000748_070--Hb_000563_610 Hb_001936_030 Hb_001936_030 Hb_000748_070--Hb_001936_030 Hb_005000_040 Hb_005000_040 Hb_002057_010--Hb_005000_040 Hb_000140_190 Hb_000140_190 Hb_002057_010--Hb_000140_190 Hb_007044_070 Hb_007044_070 Hb_002057_010--Hb_007044_070 Hb_001268_330 Hb_001268_330 Hb_002057_010--Hb_001268_330 Hb_000256_100 Hb_000256_100 Hb_002057_010--Hb_000256_100 Hb_000347_550 Hb_000347_550 Hb_004195_240--Hb_000347_550 Hb_173448_010 Hb_173448_010 Hb_004195_240--Hb_173448_010 Hb_004195_240--Hb_148435_010 Hb_004774_060 Hb_004774_060 Hb_004195_240--Hb_004774_060 Hb_061195_010 Hb_061195_010 Hb_004195_240--Hb_061195_010 Hb_148914_010 Hb_148914_010 Hb_004195_240--Hb_148914_010 Hb_035583_010 Hb_035583_010 Hb_148435_010--Hb_035583_010 Hb_148435_010--Hb_000347_550 Hb_148435_010--Hb_061195_010 Hb_148435_010--Hb_005000_040 Hb_004055_180--Hb_004774_060 Hb_097908_010 Hb_097908_010 Hb_004055_180--Hb_097908_010 Hb_001464_010 Hb_001464_010 Hb_004055_180--Hb_001464_010 Hb_004055_180--Hb_000563_610 Hb_175968_010 Hb_175968_010 Hb_004055_180--Hb_175968_010 Hb_007417_020 Hb_007417_020 Hb_004055_180--Hb_007417_020 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_000563_610--Hb_004774_060 Hb_000917_330 Hb_000917_330 Hb_001936_030--Hb_000917_330 Hb_000625_130 Hb_000625_130 Hb_001936_030--Hb_000625_130 Hb_002248_020 Hb_002248_020 Hb_001936_030--Hb_002248_020 Hb_025469_040 Hb_025469_040 Hb_001936_030--Hb_025469_040 Hb_001936_030--Hb_007044_070 Hb_001936_030--Hb_004774_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.27182 1.31795 0.599881 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0381011 0.269748 0.279509 11.4553 0.435439

CAGE analysis