Hb_000749_010

Information

Type -
Description -
Location Contig749: 6647-19513
Sequence    

Annotation

kegg
ID rcu:RCOM_1522480
description nucleic acid binding protein, putative (EC:2.7.7.7)
nr
ID XP_012084952.1
description PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
swissprot
ID Q8NDF8
description Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2
trembl
ID B9SE42
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1522480 PE=4 SV=1
Gene Ontology
ID GO:0003887
description non-canonical poly rna polymerase papd5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56771: 6831-7010 , PASA_asmbl_56772: 7088-16374 , PASA_asmbl_56773: 12119-12663 , PASA_asmbl_56774: 12737-13046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_010 0.0 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
2 Hb_002205_230 0.0578072034 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
3 Hb_001377_190 0.0614648768 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
4 Hb_000363_310 0.0653339939 - - DNA topoisomerase type I, putative [Ricinus communis]
5 Hb_021374_030 0.0675869175 - - hypothetical protein RCOM_0351490 [Ricinus communis]
6 Hb_000599_270 0.0689493441 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
7 Hb_000111_170 0.0697197596 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
8 Hb_001089_030 0.0700562639 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
9 Hb_000795_040 0.0703225903 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
10 Hb_188281_040 0.0712005349 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
11 Hb_000189_600 0.0716581388 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
12 Hb_001789_110 0.0717899232 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_005867_070 0.0718716131 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000085_210 0.0724045316 - - DNA topoisomerase type I, putative [Ricinus communis]
15 Hb_004837_180 0.0730293875 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
16 Hb_183433_010 0.0733552916 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
17 Hb_007413_010 0.0740725061 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
18 Hb_002205_030 0.0749786127 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
19 Hb_001623_270 0.0763780454 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
20 Hb_003117_030 0.0765205545 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000749_010 Hb_000749_010 Hb_002205_230 Hb_002205_230 Hb_000749_010--Hb_002205_230 Hb_001377_190 Hb_001377_190 Hb_000749_010--Hb_001377_190 Hb_000363_310 Hb_000363_310 Hb_000749_010--Hb_000363_310 Hb_021374_030 Hb_021374_030 Hb_000749_010--Hb_021374_030 Hb_000599_270 Hb_000599_270 Hb_000749_010--Hb_000599_270 Hb_000111_170 Hb_000111_170 Hb_000749_010--Hb_000111_170 Hb_000059_380 Hb_000059_380 Hb_002205_230--Hb_000059_380 Hb_002205_230--Hb_000599_270 Hb_001589_010 Hb_001589_010 Hb_002205_230--Hb_001589_010 Hb_002205_230--Hb_021374_030 Hb_000797_040 Hb_000797_040 Hb_002205_230--Hb_000797_040 Hb_007413_010 Hb_007413_010 Hb_001377_190--Hb_007413_010 Hb_000189_600 Hb_000189_600 Hb_001377_190--Hb_000189_600 Hb_006913_020 Hb_006913_020 Hb_001377_190--Hb_006913_020 Hb_001377_190--Hb_000363_310 Hb_001925_060 Hb_001925_060 Hb_001377_190--Hb_001925_060 Hb_000347_430 Hb_000347_430 Hb_000363_310--Hb_000347_430 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_021374_030--Hb_006913_020 Hb_021374_030--Hb_007413_010 Hb_021374_030--Hb_000599_270 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010 Hb_002581_010 Hb_002581_010 Hb_000599_270--Hb_002581_010 Hb_000599_270--Hb_006913_020 Hb_000599_270--Hb_007413_010 Hb_017469_110 Hb_017469_110 Hb_000599_270--Hb_017469_110 Hb_000085_210 Hb_000085_210 Hb_000111_170--Hb_000085_210 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_030414_040 Hb_030414_040 Hb_000111_170--Hb_030414_040 Hb_005288_070 Hb_005288_070 Hb_000111_170--Hb_005288_070 Hb_000111_170--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.67654 7.86729 8.67465 5.68813 5.37151 6.37504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.50142 7.88637 4.31035 7.95822 10.4774

CAGE analysis