Hb_000749_020

Information

Type -
Description -
Location Contig749: 20565-24609
Sequence    

Annotation

kegg
ID tcc:TCM_031454
description Nucleotide-diphospho-sugar transferases superfamily protein isoform 1
nr
ID XP_007021424.1
description Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID Q9C920
description 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1
trembl
ID A0A061F6F5
description Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_031454 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 3-deoxy-manno-octulosonate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_020 0.0 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
2 Hb_002817_040 0.0936770539 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
3 Hb_000086_210 0.0963287115 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000808_150 0.0995873312 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
5 Hb_002759_120 0.1063079647 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005074_040 0.1099500405 - - ATP binding protein, putative [Ricinus communis]
7 Hb_007904_060 0.1128884256 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
8 Hb_000139_300 0.1131908777 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
9 Hb_000327_360 0.1136679584 - - unnamed protein product [Coffea canephora]
10 Hb_001369_010 0.1136998504 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
11 Hb_007101_260 0.1150510745 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
12 Hb_000140_060 0.1151492095 - - 50S ribosomal protein L5, putative [Ricinus communis]
13 Hb_161396_010 0.1159220095 - - hypothetical protein F383_26394 [Gossypium arboreum]
14 Hb_001195_660 0.1178232071 - - metalloendopeptidase, putative [Ricinus communis]
15 Hb_003935_070 0.1182261433 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_001369_100 0.1196013821 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
17 Hb_000689_050 0.119647975 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009079_050 0.122700804 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
19 Hb_000077_310 0.1228510681 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
20 Hb_001180_010 0.1249559218 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_020 Hb_000749_020 Hb_002817_040 Hb_002817_040 Hb_000749_020--Hb_002817_040 Hb_000086_210 Hb_000086_210 Hb_000749_020--Hb_000086_210 Hb_000808_150 Hb_000808_150 Hb_000749_020--Hb_000808_150 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_005074_040 Hb_005074_040 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060 Hb_001369_100 Hb_001369_100 Hb_002817_040--Hb_001369_100 Hb_009079_050 Hb_009079_050 Hb_002817_040--Hb_009079_050 Hb_000108_150 Hb_000108_150 Hb_002817_040--Hb_000108_150 Hb_000612_090 Hb_000612_090 Hb_002817_040--Hb_000612_090 Hb_002028_180 Hb_002028_180 Hb_002817_040--Hb_002028_180 Hb_000139_300 Hb_000139_300 Hb_000086_210--Hb_000139_300 Hb_000152_440 Hb_000152_440 Hb_000086_210--Hb_000152_440 Hb_000086_210--Hb_005074_040 Hb_005563_010 Hb_005563_010 Hb_000086_210--Hb_005563_010 Hb_000935_040 Hb_000935_040 Hb_000086_210--Hb_000935_040 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000808_150--Hb_000139_300 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_003752_090 Hb_003752_090 Hb_002759_120--Hb_003752_090 Hb_000096_190 Hb_000096_190 Hb_002759_120--Hb_000096_190 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_042083_040 Hb_042083_040 Hb_002759_120--Hb_042083_040 Hb_158092_100 Hb_158092_100 Hb_002759_120--Hb_158092_100 Hb_003994_080 Hb_003994_080 Hb_002759_120--Hb_003994_080 Hb_014497_010 Hb_014497_010 Hb_005074_040--Hb_014497_010 Hb_005074_040--Hb_000139_300 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_000689_050 Hb_000689_050 Hb_005074_040--Hb_000689_050 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_007904_060--Hb_158092_100 Hb_007904_060--Hb_000108_150 Hb_006420_010 Hb_006420_010 Hb_007904_060--Hb_006420_010 Hb_003020_250 Hb_003020_250 Hb_007904_060--Hb_003020_250 Hb_007904_060--Hb_003752_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75947 5.90566 29.4794 38.0536 2.5905 3.45084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90663 7.47492 3.8992 7.70189 38.0243

CAGE analysis