Hb_000749_100

Information

Type -
Description -
Location Contig749: 74674-80197
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_100 0.0 - - -
2 Hb_002400_430 0.1857925607 - - -
3 Hb_101624_010 0.2481088514 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_005031_010 0.2481501438 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_100451_010 0.2486258406 - - -
6 Hb_027472_200 0.2490560467 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_002217_290 0.2510017256 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
8 Hb_000922_210 0.2517411883 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
9 Hb_003938_040 0.2545476161 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
10 Hb_000788_140 0.2617066488 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007108_060 0.2636278511 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_000251_140 0.2909468681 - - leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_006995_030 0.3067377423 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
14 Hb_001596_010 0.3090747916 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
15 Hb_005542_170 0.3140796779 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001226_190 0.3149162427 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
17 Hb_005183_180 0.3194621263 - - alpha amylase family protein [Populus trichocarpa]
18 Hb_003226_270 0.3207003339 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
19 Hb_130470_010 0.3209715745 - - hypothetical protein, partial [Pseudomonas tolaasii]
20 Hb_163434_010 0.3266098393 - - hypothetical protein JCGZ_13470 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_100 Hb_000749_100 Hb_002400_430 Hb_002400_430 Hb_000749_100--Hb_002400_430 Hb_101624_010 Hb_101624_010 Hb_000749_100--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_000749_100--Hb_005031_010 Hb_100451_010 Hb_100451_010 Hb_000749_100--Hb_100451_010 Hb_027472_200 Hb_027472_200 Hb_000749_100--Hb_027472_200 Hb_002217_290 Hb_002217_290 Hb_000749_100--Hb_002217_290 Hb_002400_430--Hb_101624_010 Hb_002400_430--Hb_005031_010 Hb_007108_060 Hb_007108_060 Hb_002400_430--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_002400_430--Hb_006995_030 Hb_005542_170 Hb_005542_170 Hb_002400_430--Hb_005542_170 Hb_003226_270 Hb_003226_270 Hb_002400_430--Hb_003226_270 Hb_101624_010--Hb_005031_010 Hb_101624_010--Hb_005542_170 Hb_033095_050 Hb_033095_050 Hb_101624_010--Hb_033095_050 Hb_025528_010 Hb_025528_010 Hb_101624_010--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_101624_010--Hb_002249_200 Hb_005031_010--Hb_005542_170 Hb_005031_010--Hb_033095_050 Hb_005031_010--Hb_025528_010 Hb_005031_010--Hb_002249_200 Hb_100451_010--Hb_027472_200 Hb_003938_040 Hb_003938_040 Hb_100451_010--Hb_003938_040 Hb_100451_010--Hb_007108_060 Hb_100451_010--Hb_006995_030 Hb_100451_010--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_100451_010--Hb_130470_010 Hb_027472_200--Hb_003938_040 Hb_027472_200--Hb_007108_060 Hb_027472_200--Hb_006995_030 Hb_005183_180 Hb_005183_180 Hb_027472_200--Hb_005183_180 Hb_027472_200--Hb_002400_430 Hb_000922_210 Hb_000922_210 Hb_002217_290--Hb_000922_210 Hb_130507_020 Hb_130507_020 Hb_002217_290--Hb_130507_020 Hb_001226_190 Hb_001226_190 Hb_002217_290--Hb_001226_190 Hb_000668_210 Hb_000668_210 Hb_002217_290--Hb_000668_210 Hb_001951_160 Hb_001951_160 Hb_002217_290--Hb_001951_160 Hb_024404_040 Hb_024404_040 Hb_002217_290--Hb_024404_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0125319 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.25723 0 0.0457229 0.178321

CAGE analysis