Hb_000749_140

Information

Type -
Description -
Location Contig749: 135857-141960
Sequence    

Annotation

kegg
ID rcu:RCOM_1124580
description AMP dependent CoA ligase, putative (EC:6.2.1.26)
nr
ID XP_012084935.1
description PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
swissprot
ID Q8VYJ1
description 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal OS=Arabidopsis thaliana GN=AAE14 PE=1 SV=1
trembl
ID B9SRD9
description AMP dependent CoA ligase, putative OS=Ricinus communis GN=RCOM_1124580 PE=4 SV=1
Gene Ontology
ID GO:0016877
description 2-succinylbenzoate-- chloroplastic peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56788: 135811-138413 , PASA_asmbl_56789: 138440-139816 , PASA_asmbl_56791: 139652-142007
cDNA
(Sanger)
(ID:Location)		 053_E07r.ab1: 142712-143517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_140 0.0 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
2 Hb_101133_030 0.0526498227 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
3 Hb_001916_110 0.0549735741 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
4 Hb_000340_280 0.0615930058 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001233_050 0.0715702225 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
6 Hb_001942_060 0.0730082882 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000928_100 0.0736257443 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
8 Hb_022167_010 0.0754584007 - - Kinase, putative isoform 2 [Theobroma cacao]
9 Hb_002805_200 0.0767205231 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
10 Hb_015044_010 0.0843915616 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
11 Hb_000359_050 0.0844060543 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
12 Hb_001014_240 0.0848553213 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
13 Hb_000809_190 0.0884926951 - - PREDICTED: myosin-6-like [Jatropha curcas]
14 Hb_124677_010 0.0895626422 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003683_170 0.091515705 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003651_030 0.0924267643 - - lyase, putative [Ricinus communis]
17 Hb_005736_120 0.0929601766 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
18 Hb_000281_120 0.0951462704 - - protein binding protein, putative [Ricinus communis]
19 Hb_163950_090 0.0974928082 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
20 Hb_006775_100 0.0990189845 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000749_140 Hb_000749_140 Hb_101133_030 Hb_101133_030 Hb_000749_140--Hb_101133_030 Hb_001916_110 Hb_001916_110 Hb_000749_140--Hb_001916_110 Hb_000340_280 Hb_000340_280 Hb_000749_140--Hb_000340_280 Hb_001233_050 Hb_001233_050 Hb_000749_140--Hb_001233_050 Hb_001942_060 Hb_001942_060 Hb_000749_140--Hb_001942_060 Hb_000928_100 Hb_000928_100 Hb_000749_140--Hb_000928_100 Hb_101133_030--Hb_000340_280 Hb_001014_240 Hb_001014_240 Hb_101133_030--Hb_001014_240 Hb_000359_050 Hb_000359_050 Hb_101133_030--Hb_000359_050 Hb_101133_030--Hb_001233_050 Hb_003651_030 Hb_003651_030 Hb_101133_030--Hb_003651_030 Hb_006775_100 Hb_006775_100 Hb_001916_110--Hb_006775_100 Hb_002805_200 Hb_002805_200 Hb_001916_110--Hb_002805_200 Hb_001916_110--Hb_000340_280 Hb_001916_110--Hb_000928_100 Hb_001916_110--Hb_101133_030 Hb_000340_280--Hb_000359_050 Hb_000340_280--Hb_002805_200 Hb_000340_280--Hb_003651_030 Hb_000281_120 Hb_000281_120 Hb_000340_280--Hb_000281_120 Hb_001006_150 Hb_001006_150 Hb_000340_280--Hb_001006_150 Hb_001233_050--Hb_001942_060 Hb_001233_050--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_001233_050--Hb_000210_030 Hb_002078_280 Hb_002078_280 Hb_001233_050--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001233_050--Hb_000821_030 Hb_001942_060--Hb_101133_030 Hb_001942_060--Hb_002078_280 Hb_001942_060--Hb_000821_030 Hb_004627_050 Hb_004627_050 Hb_001942_060--Hb_004627_050 Hb_022167_010 Hb_022167_010 Hb_000928_100--Hb_022167_010 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_033834_020 Hb_033834_020 Hb_000928_100--Hb_033834_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0138866 0.874982 14.8202 2.23062 0.0112061 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0254478 0 0 0.494416 10.0789

CAGE analysis