Hb_000749_150

Information

Type -
Description -
Location Contig749: 142714-143659
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56792: 142654-143996 , PASA_asmbl_56793: 142877-143070
cDNA
(Sanger)
(ID:Location)		 027_F14.ab1: 142710-143628 , 053_E07.ab1: 142709-143517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_150 0.0 - - -
2 Hb_004204_200 0.0652922044 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
3 Hb_010608_010 0.0693196434 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
4 Hb_000803_150 0.0739734012 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
5 Hb_000165_030 0.0743993228 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
6 Hb_000204_040 0.0771955634 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
7 Hb_000120_500 0.0779764729 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
8 Hb_003642_060 0.081188203 - - hypothetical protein RCOM_1189860 [Ricinus communis]
9 Hb_000057_040 0.0820637816 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_001214_130 0.0830900328 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
11 Hb_001840_080 0.0833025943 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
12 Hb_003038_030 0.0834109274 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
13 Hb_000442_160 0.0835025393 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
14 Hb_141131_010 0.0848744916 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
15 Hb_000905_190 0.0873102179 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
16 Hb_005883_050 0.0883578317 - - PREDICTED: transportin-3 [Jatropha curcas]
17 Hb_028639_060 0.089592441 - - transporter, putative [Ricinus communis]
18 Hb_168707_030 0.0898045447 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
19 Hb_000162_090 0.0899287972 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
20 Hb_148912_010 0.0900191097 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000749_150 Hb_000749_150 Hb_004204_200 Hb_004204_200 Hb_000749_150--Hb_004204_200 Hb_010608_010 Hb_010608_010 Hb_000749_150--Hb_010608_010 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000749_150--Hb_000165_030 Hb_000204_040 Hb_000204_040 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500 Hb_001741_140 Hb_001741_140 Hb_004204_200--Hb_001741_140 Hb_010128_130 Hb_010128_130 Hb_004204_200--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_004204_200--Hb_001221_230 Hb_000905_190 Hb_000905_190 Hb_004204_200--Hb_000905_190 Hb_000349_060 Hb_000349_060 Hb_004204_200--Hb_000349_060 Hb_028639_060 Hb_028639_060 Hb_010608_010--Hb_028639_060 Hb_003642_060 Hb_003642_060 Hb_010608_010--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_010608_010--Hb_001214_130 Hb_033642_010 Hb_033642_010 Hb_010608_010--Hb_033642_010 Hb_010608_010--Hb_000905_190 Hb_000803_150--Hb_001214_130 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020 Hb_000165_030--Hb_000162_090 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_000204_040--Hb_000120_500 Hb_000943_070 Hb_000943_070 Hb_000204_040--Hb_000943_070 Hb_141131_010 Hb_141131_010 Hb_000204_040--Hb_141131_010 Hb_000364_010 Hb_000364_010 Hb_000204_040--Hb_000364_010 Hb_003502_080 Hb_003502_080 Hb_000204_040--Hb_003502_080 Hb_000956_030 Hb_000956_030 Hb_000120_500--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_000120_500--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000120_500--Hb_000390_060 Hb_005883_050 Hb_005883_050 Hb_000120_500--Hb_005883_050 Hb_000120_500--Hb_028639_060 Hb_004198_010 Hb_004198_010 Hb_000120_500--Hb_004198_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.4207 22.073 23.3256 27.2885 66.6237 127.337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.2369 65.3411 59.9529 23.6069 12.9964

CAGE analysis