Hb_000749_190

Information

Type -
Description -
Location Contig749: 181604-186869
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41290g
description GTP-binding family protein
nr
ID XP_011042468.1
description PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
swissprot
ID A2XGQ1
description Nuclear/nucleolar GTPase 2 OS=Oryza sativa subsp. indica GN=NUG2 PE=3 SV=1
trembl
ID B9N1J3
description GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0001s41290g PE=4 SV=1
Gene Ontology
ID GO:0005730
description nucleolar gtp-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56797: 181970-184077 , PASA_asmbl_56798: 186372-186822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_190 0.0 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
2 Hb_000466_140 0.0694106776 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
3 Hb_001671_100 0.0707055745 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
4 Hb_000392_430 0.0759705339 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
5 Hb_004567_090 0.076725909 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
6 Hb_001314_050 0.0779627017 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
7 Hb_000111_320 0.0786833154 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
8 Hb_000406_200 0.0790492012 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
9 Hb_005054_090 0.0792660112 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
10 Hb_000181_400 0.0801816565 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
11 Hb_003847_130 0.0807717991 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
12 Hb_007416_120 0.0815184888 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
13 Hb_001021_150 0.0865967755 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
14 Hb_000792_010 0.0867216981 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
15 Hb_001417_030 0.0870606301 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_000003_320 0.0871508154 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
17 Hb_000656_070 0.0872179558 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001876_050 0.0879646918 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
19 Hb_003913_070 0.0886260978 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
20 Hb_001862_130 0.0890473441 - - Protein FRIGIDA, putative [Ricinus communis]

Gene co-expression network

sample Hb_000749_190 Hb_000749_190 Hb_000466_140 Hb_000466_140 Hb_000749_190--Hb_000466_140 Hb_001671_100 Hb_001671_100 Hb_000749_190--Hb_001671_100 Hb_000392_430 Hb_000392_430 Hb_000749_190--Hb_000392_430 Hb_004567_090 Hb_004567_090 Hb_000749_190--Hb_004567_090 Hb_001314_050 Hb_001314_050 Hb_000749_190--Hb_001314_050 Hb_000111_320 Hb_000111_320 Hb_000749_190--Hb_000111_320 Hb_000466_140--Hb_000111_320 Hb_001247_310 Hb_001247_310 Hb_000466_140--Hb_001247_310 Hb_000466_140--Hb_000392_430 Hb_002811_180 Hb_002811_180 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001876_050 Hb_001876_050 Hb_001671_100--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_001671_100--Hb_001999_310 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_001671_100--Hb_000392_430 Hb_001671_100--Hb_001314_050 Hb_000392_430--Hb_000111_320 Hb_000392_430--Hb_001314_050 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_002110_190 Hb_002110_190 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150 Hb_001314_050--Hb_000111_320 Hb_031862_100 Hb_031862_100 Hb_001314_050--Hb_031862_100 Hb_005914_170 Hb_005914_170 Hb_001314_050--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_001314_050--Hb_001189_070 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_000111_320--Hb_002811_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.40011 9.29304 6.56695 10.3129 12.5737 12.8649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6118 15.2018 9.0817 17.0713 14.5314

CAGE analysis