Hb_000749_200

Information

Type -
Description -
Location Contig749: 189204-207627
Sequence    

Annotation

kegg
ID rcu:RCOM_1125810
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_012084926.1
description PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
swissprot
ID Q6K7R2
description Plant intracellular Ras-group-related LRR protein 6 OS=Oryza sativa subsp. japonica GN=IRL6 PE=2 SV=1
trembl
ID A0A067K447
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20965 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_200 0.0 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
2 Hb_003683_030 0.0694436731 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
3 Hb_000056_310 0.0987094203 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
4 Hb_006252_030 0.1036214583 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
5 Hb_000465_440 0.1149213299 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
6 Hb_002400_010 0.1199520841 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
7 Hb_000934_260 0.1203687502 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_005074_050 0.1218379695 - - PREDICTED: myosin-6-like [Jatropha curcas]
9 Hb_007594_080 0.1223487722 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
10 Hb_001250_040 0.1232366491 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
11 Hb_000322_040 0.1237889905 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
12 Hb_004158_050 0.1242170373 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
13 Hb_000212_250 0.1248478682 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000009_020 0.1250839268 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
15 Hb_003894_060 0.1274852651 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002498_170 0.1276442289 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_004837_210 0.1288033878 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
18 Hb_001301_330 0.1289931462 - - OTU-like cysteine protease family protein [Populus trichocarpa]
19 Hb_001793_020 0.1304797523 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
20 Hb_003376_390 0.1314971292 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000749_200 Hb_000749_200 Hb_003683_030 Hb_003683_030 Hb_000749_200--Hb_003683_030 Hb_000056_310 Hb_000056_310 Hb_000749_200--Hb_000056_310 Hb_006252_030 Hb_006252_030 Hb_000749_200--Hb_006252_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000934_260 Hb_000934_260 Hb_000749_200--Hb_000934_260 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_003683_030--Hb_003894_060 Hb_004837_210 Hb_004837_210 Hb_003683_030--Hb_004837_210 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_001953_100 Hb_001953_100 Hb_003683_030--Hb_001953_100 Hb_148146_010 Hb_148146_010 Hb_000056_310--Hb_148146_010 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_000056_310--Hb_001953_100 Hb_000322_040 Hb_000322_040 Hb_006252_030--Hb_000322_040 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_006252_030--Hb_005618_080 Hb_002498_170 Hb_002498_170 Hb_006252_030--Hb_002498_170 Hb_000665_270 Hb_000665_270 Hb_000465_440--Hb_000665_270 Hb_009288_040 Hb_009288_040 Hb_000465_440--Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_000465_440--Hb_003752_090 Hb_000336_200 Hb_000336_200 Hb_000465_440--Hb_000336_200 Hb_001793_020 Hb_001793_020 Hb_000465_440--Hb_001793_020 Hb_001649_030 Hb_001649_030 Hb_000465_440--Hb_001649_030 Hb_004208_090 Hb_004208_090 Hb_002400_010--Hb_004208_090 Hb_002400_010--Hb_000056_310 Hb_002400_010--Hb_000934_260 Hb_002400_010--Hb_006252_030 Hb_002400_010--Hb_000322_040 Hb_000934_260--Hb_004208_090 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_000934_260--Hb_000322_040 Hb_001999_260 Hb_001999_260 Hb_000934_260--Hb_001999_260 Hb_050514_020 Hb_050514_020 Hb_000934_260--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179018 0.388242 1.7602 0.615343 0.319765 0.325172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.196419 0.128771 0.0483092 0.185147 1.18326

CAGE analysis