Hb_000749_220

Information

Type -
Description -
Location Contig749: 220873-226973
Sequence    

Annotation

kegg
ID rcu:RCOM_1126130
description Ran GTPase binding protein, putative
nr
ID XP_012084924.1
description PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067K5D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20964 PE=4 SV=1
Gene Ontology
ID GO:0016705
description ultraviolet-b receptor uvr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56799: 220889-227040 , PASA_asmbl_56800: 220889-227040 , PASA_asmbl_56801: 225747-225951
cDNA
(Sanger)
(ID:Location)		 007_N07.ab1: 220889-221857 , 030_M23.ab1: 220889-221741

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_220 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
2 Hb_003177_030 0.0379689034 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
3 Hb_000172_290 0.0692876766 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
4 Hb_000477_060 0.0694617865 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
5 Hb_000003_250 0.0707981161 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_005490_030 0.070858112 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
7 Hb_001159_130 0.0753255787 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
8 Hb_000116_270 0.0756838906 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
9 Hb_000066_080 0.0781172246 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
10 Hb_001009_270 0.0788570226 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
11 Hb_000046_320 0.0794700372 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_164010_030 0.0797622607 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
13 Hb_003605_090 0.0802424993 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
14 Hb_004724_080 0.0809949896 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000096_010 0.0813686444 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
16 Hb_005144_160 0.0814231888 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
17 Hb_001377_490 0.0819080635 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
18 Hb_002685_210 0.0825332712 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_003697_040 0.0826361714 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
20 Hb_002809_050 0.0830888269 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_220 Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_003697_040 Hb_003697_040 Hb_000477_060--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000477_060--Hb_003605_090 Hb_000363_360 Hb_000363_360 Hb_000477_060--Hb_000363_360 Hb_000116_270 Hb_000116_270 Hb_000477_060--Hb_000116_270 Hb_004934_100 Hb_004934_100 Hb_000477_060--Hb_004934_100 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_005490_030--Hb_000172_290 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_001159_130--Hb_000019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3337 6.35053 7.49406 15.4416 11.5837 15.1801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5186 15.7438 22.8921 11.5588 10.9005

CAGE analysis