Hb_000749_240

Information

Type -
Description -
Location Contig749: 252778-254928
Sequence    

Annotation

kegg
ID rcu:RCOM_1126140
description hypothetical protein
nr
ID XP_002528574.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84WQ5
description CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2
trembl
ID B9SRF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1126140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56802: 252893-254911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009838_040 0.1648287541 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
3 Hb_017134_010 0.1652170253 - - HEV1.2 [Hevea brasiliensis]
4 Hb_000115_050 0.166432463 - - -
5 Hb_005000_160 0.1714515192 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
6 Hb_001579_140 0.1755325775 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
7 Hb_001158_190 0.1848232189 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
8 Hb_012239_100 0.1858917232 - - hypothetical protein VITISV_043897 [Vitis vinifera]
9 Hb_173281_010 0.1876808885 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
10 Hb_000720_190 0.1910334144 - - unknown [Populus trichocarpa x Populus deltoides]
11 Hb_000613_160 0.192053466 - - coated vesicle membrane protein, putative [Ricinus communis]
12 Hb_001959_130 0.197817294 - - transporter, putative [Ricinus communis]
13 Hb_000788_080 0.2022262707 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
14 Hb_088538_010 0.2031208601 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
15 Hb_001507_070 0.2071818976 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001258_140 0.2080304688 - - -
17 Hb_000260_580 0.209405949 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000215_180 0.2101543204 - - hypothetical protein 17 [Hevea brasiliensis]
19 Hb_003371_100 0.2118881814 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_000453_300 0.212223699 - - latex cystatin [Hevea brasiliensis]

Gene co-expression network

sample Hb_000749_240 Hb_000749_240 Hb_009838_040 Hb_009838_040 Hb_000749_240--Hb_009838_040 Hb_017134_010 Hb_017134_010 Hb_000749_240--Hb_017134_010 Hb_000115_050 Hb_000115_050 Hb_000749_240--Hb_000115_050 Hb_005000_160 Hb_005000_160 Hb_000749_240--Hb_005000_160 Hb_001579_140 Hb_001579_140 Hb_000749_240--Hb_001579_140 Hb_001158_190 Hb_001158_190 Hb_000749_240--Hb_001158_190 Hb_000215_180 Hb_000215_180 Hb_009838_040--Hb_000215_180 Hb_012239_100 Hb_012239_100 Hb_009838_040--Hb_012239_100 Hb_009838_040--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_009838_040--Hb_000788_080 Hb_001258_140 Hb_001258_140 Hb_009838_040--Hb_001258_140 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100 Hb_111039_010 Hb_111039_010 Hb_017134_010--Hb_111039_010 Hb_004291_010 Hb_004291_010 Hb_017134_010--Hb_004291_010 Hb_017134_010--Hb_001579_140 Hb_108528_010 Hb_108528_010 Hb_017134_010--Hb_108528_010 Hb_017134_010--Hb_000115_050 Hb_003913_080 Hb_003913_080 Hb_000115_050--Hb_003913_080 Hb_002067_100 Hb_002067_100 Hb_000115_050--Hb_002067_100 Hb_002151_050 Hb_002151_050 Hb_000115_050--Hb_002151_050 Hb_000115_050--Hb_108528_010 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_001276_060 Hb_001276_060 Hb_005000_160--Hb_001276_060 Hb_005000_160--Hb_000788_080 Hb_011671_400 Hb_011671_400 Hb_005000_160--Hb_011671_400 Hb_000613_160 Hb_000613_160 Hb_005000_160--Hb_000613_160 Hb_000792_120 Hb_000792_120 Hb_001579_140--Hb_000792_120 Hb_001579_140--Hb_000613_160 Hb_001579_140--Hb_012239_100 Hb_001579_140--Hb_005000_160 Hb_001579_140--Hb_009838_040 Hb_010931_050 Hb_010931_050 Hb_001158_190--Hb_010931_050 Hb_001511_140 Hb_001511_140 Hb_001158_190--Hb_001511_140 Hb_088538_010 Hb_088538_010 Hb_001158_190--Hb_088538_010 Hb_001158_190--Hb_000788_080 Hb_000261_450 Hb_000261_450 Hb_001158_190--Hb_000261_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.5065 11.4197 2.09837 17.7298 1.91283 7.34438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
230.43 135.804 188.516 43.6198 2.18011

CAGE analysis