Hb_000749_260

Information

Type -
Description -
Location Contig749: 270343-272415
Sequence    

Annotation

kegg
ID rcu:RCOM_0252880
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_012084920.1
description PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
swissprot
ID Q41249
description Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1
trembl
ID A0A067K442
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20960 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protochlorophyllide chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56805: 270373-272330 , PASA_asmbl_56806: 270729-272330 , PASA_asmbl_56808: 273404-280454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_260 0.0 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
2 Hb_000390_210 0.0812610333 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_001544_050 0.0900679743 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
4 Hb_147378_010 0.0948884972 - - -
5 Hb_000465_410 0.0995017486 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002701_070 0.1056399418 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
7 Hb_000352_280 0.1089793485 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
8 Hb_009838_070 0.1094948816 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
9 Hb_006153_150 0.115715053 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
10 Hb_143004_020 0.1172439598 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
11 Hb_001180_010 0.1173886351 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
12 Hb_000711_030 0.1185768688 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
13 Hb_000061_250 0.1197950292 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
14 Hb_089966_010 0.1210433097 - - -
15 Hb_000134_040 0.1211506308 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
16 Hb_002272_220 0.1212241559 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009393_130 0.1216243938 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
18 Hb_004650_050 0.1230424064 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
19 Hb_000322_030 0.124817649 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
20 Hb_003680_060 0.1263788959 - - hypothetical protein VITISV_022322 [Vitis vinifera]

Gene co-expression network

sample Hb_000749_260 Hb_000749_260 Hb_000390_210 Hb_000390_210 Hb_000749_260--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000749_260--Hb_001544_050 Hb_147378_010 Hb_147378_010 Hb_000749_260--Hb_147378_010 Hb_000465_410 Hb_000465_410 Hb_000749_260--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_000390_210--Hb_001544_050 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_001544_050--Hb_000465_410 Hb_001544_050--Hb_002701_070 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_147378_010--Hb_001544_050 Hb_004650_050 Hb_004650_050 Hb_147378_010--Hb_004650_050 Hb_008053_030 Hb_008053_030 Hb_147378_010--Hb_008053_030 Hb_147378_010--Hb_000465_410 Hb_000465_410--Hb_002701_070 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000465_410--Hb_004994_330 Hb_002701_070--Hb_001180_010 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040 Hb_172426_060 Hb_172426_060 Hb_000352_280--Hb_172426_060 Hb_000019_080 Hb_000019_080 Hb_000352_280--Hb_000019_080 Hb_074197_030 Hb_074197_030 Hb_000352_280--Hb_074197_030 Hb_009393_130 Hb_009393_130 Hb_000352_280--Hb_009393_130 Hb_015141_010 Hb_015141_010 Hb_000352_280--Hb_015141_010 Hb_010557_010 Hb_010557_010 Hb_000352_280--Hb_010557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4257 20.7861 189.251 113.073 7.5638 4.60159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.19091 16.5017 10.053 19.2224 163.552

CAGE analysis