Hb_000751_060

Information

Type -
Description -
Location Contig751: 90251-99271
Sequence    

Annotation

kegg
ID sly:101245993
description extensin-2
nr
ID XP_011074233.1
description PREDICTED: extensin-2-like, partial [Sesamum indicum]
swissprot
ID -
description -
trembl
ID M1A0D9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004677 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56851: 98354-99568 , PASA_asmbl_56852: 98784-99393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000751_060 0.0 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
2 Hb_000645_250 0.0713756558 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
3 Hb_060152_010 0.0864882967 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_000751_070 0.0997400765 - - -
5 Hb_168319_060 0.1067850788 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
6 Hb_146930_010 0.11233507 - - -
7 Hb_000847_120 0.1167576389 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
8 Hb_015978_010 0.1194231745 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
9 Hb_003398_090 0.1219888747 - - PREDICTED: expansin-A4 [Jatropha curcas]
10 Hb_000009_430 0.1240469508 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000373_060 0.1273376558 - - PREDICTED: extensin-3 [Camelina sativa]
12 Hb_003861_090 0.1365153725 - - adenylsulfate kinase, putative [Ricinus communis]
13 Hb_000609_020 0.1370550594 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_003913_060 0.1384367554 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000254_060 0.1388056755 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001622_020 0.1407900241 - - -
17 Hb_008376_020 0.1412192713 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
18 Hb_000000_200 0.1451435079 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
19 Hb_029510_090 0.1487846022 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
20 Hb_000120_880 0.1493797595 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]

Gene co-expression network

sample Hb_000751_060 Hb_000751_060 Hb_000645_250 Hb_000645_250 Hb_000751_060--Hb_000645_250 Hb_060152_010 Hb_060152_010 Hb_000751_060--Hb_060152_010 Hb_000751_070 Hb_000751_070 Hb_000751_060--Hb_000751_070 Hb_168319_060 Hb_168319_060 Hb_000751_060--Hb_168319_060 Hb_146930_010 Hb_146930_010 Hb_000751_060--Hb_146930_010 Hb_000847_120 Hb_000847_120 Hb_000751_060--Hb_000847_120 Hb_000645_250--Hb_000847_120 Hb_008376_020 Hb_008376_020 Hb_000645_250--Hb_008376_020 Hb_000645_250--Hb_060152_010 Hb_000645_250--Hb_000751_070 Hb_000609_020 Hb_000609_020 Hb_000645_250--Hb_000609_020 Hb_060152_010--Hb_168319_060 Hb_060152_010--Hb_000751_070 Hb_001622_020 Hb_001622_020 Hb_060152_010--Hb_001622_020 Hb_000226_110 Hb_000226_110 Hb_060152_010--Hb_000226_110 Hb_000567_150 Hb_000567_150 Hb_000751_070--Hb_000567_150 Hb_000751_070--Hb_146930_010 Hb_001288_050 Hb_001288_050 Hb_000751_070--Hb_001288_050 Hb_007875_020 Hb_007875_020 Hb_168319_060--Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_168319_060--Hb_065521_010 Hb_004943_010 Hb_004943_010 Hb_168319_060--Hb_004943_010 Hb_029510_090 Hb_029510_090 Hb_168319_060--Hb_029510_090 Hb_000254_060 Hb_000254_060 Hb_168319_060--Hb_000254_060 Hb_000751_050 Hb_000751_050 Hb_146930_010--Hb_000751_050 Hb_001597_090 Hb_001597_090 Hb_146930_010--Hb_001597_090 Hb_146930_010--Hb_000645_250 Hb_007676_060 Hb_007676_060 Hb_146930_010--Hb_007676_060 Hb_000847_120--Hb_008376_020 Hb_000836_260 Hb_000836_260 Hb_000847_120--Hb_000836_260 Hb_000847_120--Hb_000609_020 Hb_000000_200 Hb_000000_200 Hb_000847_120--Hb_000000_200 Hb_000847_120--Hb_000751_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157362 7.00728 27.8569 78.845 0.0996175 0.0324637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 150.253 96.7092

CAGE analysis