Hb_000751_130

Information

Type -
Description -
Location Contig751: 132103-141002
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14920g
description POPTRDRAFT_664708; hypothetical protein
nr
ID XP_012066242.1
description PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
swissprot
ID Q9C1W5
description Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1
trembl
ID A0A067LED2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56853: 132768-140813 , PASA_asmbl_56854: 132810-140813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000751_130 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
2 Hb_001829_060 0.0593837376 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_000274_020 0.0598676557 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
4 Hb_000087_020 0.0639548922 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
5 Hb_004032_100 0.064751811 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
6 Hb_000046_110 0.0649053418 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
7 Hb_000172_030 0.0654393701 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
8 Hb_002539_090 0.0744751765 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
9 Hb_180301_010 0.0754775264 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
10 Hb_000230_540 0.0768052224 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
11 Hb_000329_310 0.0774730813 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
12 Hb_003964_100 0.0778471886 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
13 Hb_000024_030 0.0795304345 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
14 Hb_003927_130 0.080539229 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
15 Hb_001109_020 0.0814449636 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000024_080 0.0826429517 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
17 Hb_148209_080 0.0828674396 - - MED32, putative [Theobroma cacao]
18 Hb_015175_030 0.0829960377 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
19 Hb_000787_140 0.0831582646 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
20 Hb_000364_020 0.08431526 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000751_130 Hb_000751_130 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000751_130--Hb_004032_100 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030 Hb_001109_020 Hb_001109_020 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000274_020--Hb_001109_020 Hb_000274_020--Hb_000087_020 Hb_000274_020--Hb_000046_110 Hb_000444_050 Hb_000444_050 Hb_000274_020--Hb_000444_050 Hb_018133_060 Hb_018133_060 Hb_000274_020--Hb_018133_060 Hb_000024_080 Hb_000024_080 Hb_000087_020--Hb_000024_080 Hb_000087_020--Hb_000444_050 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_004032_100--Hb_000024_080 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_000046_110--Hb_001109_020 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_000046_110--Hb_003927_130 Hb_000172_030--Hb_000787_140 Hb_000172_030--Hb_000087_020 Hb_000172_030--Hb_180301_010 Hb_008544_010 Hb_008544_010 Hb_000172_030--Hb_008544_010 Hb_001437_230 Hb_001437_230 Hb_000172_030--Hb_001437_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9449 9.37643 6.30346 22.1292 26.2091 61.1672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.0957 79.1442 57.5873 19.5841 15.1565

CAGE analysis