Hb_000752_040

Information

Type -
Description -
Location Contig752: 124323-128081
Sequence    

Annotation

kegg
ID bvg:104884990
description uncharacterized LOC104884990
nr
ID XP_010668002.1
description PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCK1
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000752_040 0.0 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
2 Hb_032202_010 0.0940727791 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
3 Hb_003008_020 0.0970728384 - - auxin-responsive family protein [Populus trichocarpa]
4 Hb_007666_010 0.1058299651 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
5 Hb_003050_330 0.1068155939 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
6 Hb_002785_010 0.1122223159 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
7 Hb_005018_030 0.1220137679 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
8 Hb_036790_110 0.124601814 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
9 Hb_001158_250 0.1289637609 - - conserved hypothetical protein [Ricinus communis]
10 Hb_077774_010 0.1317443438 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_005288_100 0.1350114561 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
12 Hb_003494_150 0.1360015914 - - Silicon transporter, putative [Ricinus communis]
13 Hb_000096_050 0.1368581648 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005790_010 0.137465565 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
15 Hb_000020_180 0.1383134892 - - laccase, putative [Ricinus communis]
16 Hb_012691_060 0.1415512639 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
17 Hb_001232_040 0.1478818054 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
18 Hb_008689_010 0.1509404124 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
19 Hb_000271_130 0.1537222754 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
20 Hb_002193_080 0.1578054318 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000752_040 Hb_000752_040 Hb_032202_010 Hb_032202_010 Hb_000752_040--Hb_032202_010 Hb_003008_020 Hb_003008_020 Hb_000752_040--Hb_003008_020 Hb_007666_010 Hb_007666_010 Hb_000752_040--Hb_007666_010 Hb_003050_330 Hb_003050_330 Hb_000752_040--Hb_003050_330 Hb_002785_010 Hb_002785_010 Hb_000752_040--Hb_002785_010 Hb_005018_030 Hb_005018_030 Hb_000752_040--Hb_005018_030 Hb_032202_010--Hb_003050_330 Hb_032202_010--Hb_002785_010 Hb_003494_150 Hb_003494_150 Hb_032202_010--Hb_003494_150 Hb_032202_010--Hb_007666_010 Hb_000369_040 Hb_000369_040 Hb_032202_010--Hb_000369_040 Hb_003008_020--Hb_003050_330 Hb_008689_010 Hb_008689_010 Hb_003008_020--Hb_008689_010 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_002193_080 Hb_002193_080 Hb_003008_020--Hb_002193_080 Hb_007666_010--Hb_003494_150 Hb_007666_010--Hb_003050_330 Hb_000347_320 Hb_000347_320 Hb_007666_010--Hb_000347_320 Hb_007666_010--Hb_000369_040 Hb_003050_330--Hb_003494_150 Hb_003050_330--Hb_008689_010 Hb_003050_330--Hb_002193_080 Hb_002785_010--Hb_003050_330 Hb_002785_010--Hb_000369_040 Hb_001158_250 Hb_001158_250 Hb_002785_010--Hb_001158_250 Hb_002785_010--Hb_007666_010 Hb_012691_060 Hb_012691_060 Hb_005018_030--Hb_012691_060 Hb_000020_180 Hb_000020_180 Hb_005018_030--Hb_000020_180 Hb_019925_020 Hb_019925_020 Hb_005018_030--Hb_019925_020 Hb_000230_490 Hb_000230_490 Hb_005018_030--Hb_000230_490 Hb_005183_030 Hb_005183_030 Hb_005018_030--Hb_005183_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.244273 0.070984 0.383631 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.551965

CAGE analysis