Hb_000752_060

Information

Type -
Description -
Location Contig752: 141769-142215
Sequence    

Annotation

kegg
ID rcu:RCOM_0978060
description expressed protein, putative
nr
ID XP_002521278.1
description expressed protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5K9
description Expressed protein, putative OS=Ricinus communis GN=RCOM_0978060 PE=4 SV=1
Gene Ontology
ID GO:0005739
description expressed protein, putative

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56867: 141745-142435
cDNA
(Sanger)
(ID:Location)		 007_G05.ab1: 141745-142435 , 026_B19.ab1: 141745-142435

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000752_060 0.0 - - expressed protein, putative [Ricinus communis]
2 Hb_001437_040 0.0838597347 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
3 Hb_000366_100 0.0955768138 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
4 Hb_007166_050 0.0960935235 - - -
5 Hb_007992_030 0.0966268038 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
6 Hb_000617_320 0.1034128503 - - 40S ribosomal protein S21B [Hevea brasiliensis]
7 Hb_001019_090 0.104476421 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
8 Hb_118977_020 0.1052083273 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
9 Hb_034585_030 0.1074847095 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
10 Hb_008016_010 0.1075591297 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
11 Hb_000189_530 0.1090581926 - - 40S ribosomal protein S24B [Hevea brasiliensis]
12 Hb_007632_250 0.1108024671 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003086_110 0.1110242455 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
14 Hb_000622_100 0.1117829232 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
15 Hb_001047_010 0.1129632176 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000933_140 0.1151427259 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
17 Hb_001493_100 0.1153813185 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
18 Hb_000847_070 0.1171023173 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
19 Hb_134226_010 0.1187692203 - - 40S ribosomal protein S21e, putative [Ricinus communis]
20 Hb_006637_060 0.1188707244 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]

Gene co-expression network

sample Hb_000752_060 Hb_000752_060 Hb_001437_040 Hb_001437_040 Hb_000752_060--Hb_001437_040 Hb_000366_100 Hb_000366_100 Hb_000752_060--Hb_000366_100 Hb_007166_050 Hb_007166_050 Hb_000752_060--Hb_007166_050 Hb_007992_030 Hb_007992_030 Hb_000752_060--Hb_007992_030 Hb_000617_320 Hb_000617_320 Hb_000752_060--Hb_000617_320 Hb_001019_090 Hb_001019_090 Hb_000752_060--Hb_001019_090 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_000189_530 Hb_000189_530 Hb_000366_100--Hb_000189_530 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010 Hb_007166_050--Hb_003086_110 Hb_007166_050--Hb_000617_320 Hb_007166_050--Hb_001019_090 Hb_007166_050--Hb_118977_020 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_004502_030 Hb_004502_030 Hb_007992_030--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_007992_030--Hb_000847_070 Hb_000345_560 Hb_000345_560 Hb_007992_030--Hb_000345_560 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_000617_320--Hb_118977_020 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6777 7.20133 2.18033 11.484 35.6043 56.8821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.8024 46.5655 17.6961 6.98088 2.08773

CAGE analysis