Hb_000753_110

Information

Type transcription factor
Description TF Family: bHLH
Location Contig753: 101035-108944
Sequence    

Annotation

kegg
ID rcu:RCOM_1467110
description Transcription factor BIM1, putative
nr
ID XP_012080447.1
description PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
swissprot
ID Q9CAA4
description Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1
trembl
ID A0A067KHS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11770 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bim1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56901: 101051-101864 , PASA_asmbl_56902: 106138-108703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_110 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
2 Hb_003299_020 0.0865572846 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
3 Hb_002641_120 0.0939563711 - - PREDICTED: calmodulin [Jatropha curcas]
4 Hb_000310_060 0.1000520696 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
5 Hb_000009_420 0.1088366585 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
6 Hb_000186_030 0.109636223 - - PREDICTED: uncharacterized protein LOC105649276 isoform X1 [Jatropha curcas]
7 Hb_003398_040 0.1135818353 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
8 Hb_005545_020 0.1142207284 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
9 Hb_002391_320 0.1158197965 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
10 Hb_002016_140 0.1224244136 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
11 Hb_112064_010 0.1235416845 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
12 Hb_003050_360 0.1237415479 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
13 Hb_001377_530 0.1275698709 - - NC domain-containing family protein [Populus trichocarpa]
14 Hb_000327_200 0.1372819286 - - glutathione-s-transferase omega, putative [Ricinus communis]
15 Hb_054865_050 0.1401433517 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_004855_020 0.142337863 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
17 Hb_001754_120 0.1431550888 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
18 Hb_002397_050 0.1438348981 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
19 Hb_001675_270 0.1440633264 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
20 Hb_005527_060 0.1444120218 - - malic enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_000753_110 Hb_000753_110 Hb_003299_020 Hb_003299_020 Hb_000753_110--Hb_003299_020 Hb_002641_120 Hb_002641_120 Hb_000753_110--Hb_002641_120 Hb_000310_060 Hb_000310_060 Hb_000753_110--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_000753_110--Hb_000009_420 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030 Hb_003398_040 Hb_003398_040 Hb_000753_110--Hb_003398_040 Hb_005545_020 Hb_005545_020 Hb_003299_020--Hb_005545_020 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_003299_020--Hb_000009_420 Hb_003299_020--Hb_003398_040 Hb_002641_120--Hb_000310_060 Hb_002641_120--Hb_001377_530 Hb_002641_120--Hb_003398_040 Hb_002701_070 Hb_002701_070 Hb_002641_120--Hb_002701_070 Hb_001433_150 Hb_001433_150 Hb_002641_120--Hb_001433_150 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_005527_060 Hb_005527_060 Hb_000310_060--Hb_005527_060 Hb_000009_420--Hb_003398_040 Hb_000416_190 Hb_000416_190 Hb_000009_420--Hb_000416_190 Hb_000009_420--Hb_000310_060 Hb_010868_040 Hb_010868_040 Hb_000009_420--Hb_010868_040 Hb_000186_030--Hb_002641_120 Hb_000186_030--Hb_003299_020 Hb_008747_010 Hb_008747_010 Hb_000186_030--Hb_008747_010 Hb_000011_560 Hb_000011_560 Hb_000186_030--Hb_000011_560 Hb_000186_030--Hb_000310_060 Hb_003398_040--Hb_001587_040 Hb_003398_040--Hb_005527_060 Hb_003398_040--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.528032 7.20492 19.2081 12.1446 0.282933 0.122696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95766 2.27891 2.4553 7.46804 12.1723

CAGE analysis