Hb_000753_190

Information

Type -
Description -
Location Contig753: 170851-175009
Sequence    

Annotation

kegg
ID sot:102602292
description D-aminoacyl-tRNA deacylase-like
nr
ID XP_011015456.1
description PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
swissprot
ID Q9ZPQ3
description D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2
trembl
ID A0A0D2SDS2
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G040300 PE=4 SV=1
Gene Ontology
ID GO:0051499
description d-aminoacyl-trna deacylase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56920: 171121-171574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_190 0.0 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
2 Hb_023711_010 0.1259690568 - - -
3 Hb_003638_070 0.134683244 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
4 Hb_007290_080 0.1572616984 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
5 Hb_000010_260 0.1580878929 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
6 Hb_000329_020 0.1604153496 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
7 Hb_001387_020 0.1623170494 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
8 Hb_086639_090 0.1643731844 - - 60S ribosomal protein L7a, putative [Ricinus communis]
9 Hb_010815_030 0.1659455347 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
10 Hb_000061_130 0.1660275146 - - rotamase, putative [Ricinus communis]
11 Hb_000483_250 0.1673778969 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
12 Hb_000676_160 0.167888154 - - folate carrier protein, putative [Ricinus communis]
13 Hb_000175_320 0.1694145392 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
14 Hb_007220_010 0.1702693877 - - PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Jatropha curcas]
15 Hb_026048_070 0.1703445404 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
16 Hb_000441_110 0.1705377955 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
17 Hb_000703_270 0.1707233897 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
18 Hb_001085_270 0.1709871385 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
19 Hb_007065_010 0.1714767923 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
20 Hb_004129_040 0.1720582659 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]

Gene co-expression network

sample Hb_000753_190 Hb_000753_190 Hb_023711_010 Hb_023711_010 Hb_000753_190--Hb_023711_010 Hb_003638_070 Hb_003638_070 Hb_000753_190--Hb_003638_070 Hb_007290_080 Hb_007290_080 Hb_000753_190--Hb_007290_080 Hb_000010_260 Hb_000010_260 Hb_000753_190--Hb_000010_260 Hb_000329_020 Hb_000329_020 Hb_000753_190--Hb_000329_020 Hb_001387_020 Hb_001387_020 Hb_000753_190--Hb_001387_020 Hb_000175_320 Hb_000175_320 Hb_023711_010--Hb_000175_320 Hb_001301_050 Hb_001301_050 Hb_023711_010--Hb_001301_050 Hb_086639_090 Hb_086639_090 Hb_023711_010--Hb_086639_090 Hb_000184_100 Hb_000184_100 Hb_023711_010--Hb_000184_100 Hb_000599_280 Hb_000599_280 Hb_023711_010--Hb_000599_280 Hb_003638_070--Hb_000175_320 Hb_003038_190 Hb_003038_190 Hb_003638_070--Hb_003038_190 Hb_003638_070--Hb_023711_010 Hb_000577_090 Hb_000577_090 Hb_003638_070--Hb_000577_090 Hb_000487_230 Hb_000487_230 Hb_003638_070--Hb_000487_230 Hb_001571_090 Hb_001571_090 Hb_007290_080--Hb_001571_090 Hb_010815_030 Hb_010815_030 Hb_007290_080--Hb_010815_030 Hb_007290_080--Hb_000329_020 Hb_009384_020 Hb_009384_020 Hb_007290_080--Hb_009384_020 Hb_148909_020 Hb_148909_020 Hb_007290_080--Hb_148909_020 Hb_009711_020 Hb_009711_020 Hb_007290_080--Hb_009711_020 Hb_000083_090 Hb_000083_090 Hb_000010_260--Hb_000083_090 Hb_003683_080 Hb_003683_080 Hb_000010_260--Hb_003683_080 Hb_001136_060 Hb_001136_060 Hb_000010_260--Hb_001136_060 Hb_026048_070 Hb_026048_070 Hb_000010_260--Hb_026048_070 Hb_000483_250 Hb_000483_250 Hb_000010_260--Hb_000483_250 Hb_002609_210 Hb_002609_210 Hb_000010_260--Hb_002609_210 Hb_172221_010 Hb_172221_010 Hb_000329_020--Hb_172221_010 Hb_000042_260 Hb_000042_260 Hb_000329_020--Hb_000042_260 Hb_026398_010 Hb_026398_010 Hb_000329_020--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_000329_020--Hb_002909_130 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_019516_100 Hb_019516_100 Hb_000329_020--Hb_019516_100 Hb_001387_020--Hb_000010_260 Hb_001387_020--Hb_003683_080 Hb_000836_140 Hb_000836_140 Hb_001387_020--Hb_000836_140 Hb_000834_030 Hb_000834_030 Hb_001387_020--Hb_000834_030 Hb_000563_190 Hb_000563_190 Hb_001387_020--Hb_000563_190 Hb_000707_020 Hb_000707_020 Hb_001387_020--Hb_000707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.526617 0.432187 0.375884 0.354832 0.699813 0.761044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02171 3.82337 0.565025 1.60087 1.46637

CAGE analysis