Hb_000753_200

Information

Type -
Description -
Location Contig753: 175142-200854
Sequence    

Annotation

kegg
ID rcu:RCOM_1467520
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012080429.1
description PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
swissprot
ID Q05549
description Putative ATP-dependent helicase HRQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRQ1 PE=1 SV=1
trembl
ID B9RLI9
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1467520 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent helicase hrq1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56921: 175320-176148 , PASA_asmbl_56922: 174954-176023 , PASA_asmbl_56923: 187738-187963 , PASA_asmbl_56924: 195978-196271 , PASA_asmbl_56925: 197263-197548 , PASA_asmbl_56926: 199260-200685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_200 0.0 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
2 Hb_000265_230 0.0795873424 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
3 Hb_035755_010 0.0857957328 - - unknown [Populus trichocarpa]
4 Hb_006816_430 0.0906130348 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
5 Hb_000920_060 0.093846413 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
6 Hb_000160_210 0.0955195448 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001123_260 0.0955839634 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
8 Hb_006915_070 0.0968749656 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
9 Hb_008887_020 0.0987251993 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
10 Hb_000926_190 0.1030912491 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
11 Hb_002084_020 0.1047977697 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
12 Hb_004100_080 0.1054335079 - - conserved hypothetical protein [Ricinus communis]
13 Hb_018118_010 0.1066817412 - - DNA polymerase I, putative [Ricinus communis]
14 Hb_027760_080 0.1069351538 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000041_090 0.1072525323 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
16 Hb_048476_180 0.107315866 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
17 Hb_000281_090 0.1084053652 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
18 Hb_002422_050 0.1089300583 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
19 Hb_005271_190 0.1100939303 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000914_120 0.110523844 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000753_200 Hb_000753_200 Hb_000265_230 Hb_000265_230 Hb_000753_200--Hb_000265_230 Hb_035755_010 Hb_035755_010 Hb_000753_200--Hb_035755_010 Hb_006816_430 Hb_006816_430 Hb_000753_200--Hb_006816_430 Hb_000920_060 Hb_000920_060 Hb_000753_200--Hb_000920_060 Hb_000160_210 Hb_000160_210 Hb_000753_200--Hb_000160_210 Hb_001123_260 Hb_001123_260 Hb_000753_200--Hb_001123_260 Hb_000788_070 Hb_000788_070 Hb_000265_230--Hb_000788_070 Hb_018118_010 Hb_018118_010 Hb_000265_230--Hb_018118_010 Hb_000265_230--Hb_006816_430 Hb_001191_120 Hb_001191_120 Hb_000265_230--Hb_001191_120 Hb_000025_710 Hb_000025_710 Hb_000265_230--Hb_000025_710 Hb_003203_030 Hb_003203_030 Hb_000265_230--Hb_003203_030 Hb_001014_160 Hb_001014_160 Hb_035755_010--Hb_001014_160 Hb_008785_040 Hb_008785_040 Hb_035755_010--Hb_008785_040 Hb_035755_010--Hb_001123_260 Hb_004963_030 Hb_004963_030 Hb_035755_010--Hb_004963_030 Hb_010710_070 Hb_010710_070 Hb_035755_010--Hb_010710_070 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_006816_430--Hb_003203_030 Hb_006816_430--Hb_001123_260 Hb_027346_010 Hb_027346_010 Hb_006816_430--Hb_027346_010 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_000926_190 Hb_000926_190 Hb_000920_060--Hb_000926_190 Hb_007054_060 Hb_007054_060 Hb_000920_060--Hb_007054_060 Hb_023386_020 Hb_023386_020 Hb_000920_060--Hb_023386_020 Hb_000920_060--Hb_000160_210 Hb_000291_050 Hb_000291_050 Hb_000920_060--Hb_000291_050 Hb_000827_070 Hb_000827_070 Hb_000920_060--Hb_000827_070 Hb_007007_060 Hb_007007_060 Hb_000160_210--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_000160_210--Hb_003794_010 Hb_004100_080 Hb_004100_080 Hb_000160_210--Hb_004100_080 Hb_000160_210--Hb_023386_020 Hb_000009_090 Hb_000009_090 Hb_000160_210--Hb_000009_090 Hb_079526_030 Hb_079526_030 Hb_000160_210--Hb_079526_030 Hb_005779_080 Hb_005779_080 Hb_001123_260--Hb_005779_080 Hb_005489_020 Hb_005489_020 Hb_001123_260--Hb_005489_020 Hb_021443_040 Hb_021443_040 Hb_001123_260--Hb_021443_040 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_004097_070 Hb_004097_070 Hb_001123_260--Hb_004097_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.48895 4.15466 2.78079 1.23565 4.74658 5.72024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94963 3.26508 1.84539 3.05788 5.72162

CAGE analysis