Hb_000753_210

Information

Type -
Description -
Location Contig753: 210926-213323
Sequence    

Annotation

kegg
ID rcu:RCOM_1467530
description l-asparaginase, putative (EC:3.5.1.1)
nr
ID XP_002514609.1
description l-asparaginase, putative [Ricinus communis]
swissprot
ID P50287
description Isoaspartyl peptidase/L-asparaginase 1 OS=Arabidopsis thaliana GN=At5g08100 PE=1 SV=2
trembl
ID B9RLJ0
description L-asparaginase, putative OS=Ricinus communis GN=RCOM_1467530 PE=4 SV=1
Gene Ontology
ID GO:0005829
description isoaspartyl peptidase l-asparaginase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56927: 210877-213301
cDNA
(Sanger)
(ID:Location)		 044_A05.ab1: 210877-212735

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_210 0.0 - - l-asparaginase, putative [Ricinus communis]
2 Hb_000739_290 0.1442399856 - - cytochrome P450, putative [Ricinus communis]
3 Hb_001178_060 0.1487098011 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
4 Hb_004206_040 0.1499449398 - - cytochrome P450, putative [Ricinus communis]
5 Hb_006275_050 0.152911852 - - CP3 [Hevea brasiliensis]
6 Hb_003050_090 0.1533986362 - - lupus la ribonucleoprotein, putative [Ricinus communis]
7 Hb_012760_200 0.1544242772 - - protein phsophatase-2a, putative [Ricinus communis]
8 Hb_003299_080 0.1552611032 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
9 Hb_005228_100 0.1553610849 - - -
10 Hb_005016_030 0.1554118089 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
11 Hb_004931_040 0.1570230178 - - splicing factor-related family protein [Populus trichocarpa]
12 Hb_013753_010 0.1623855152 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
13 Hb_000212_130 0.1629146901 - - conserved hypothetical protein [Ricinus communis]
14 Hb_060437_010 0.1632531017 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
15 Hb_183510_010 0.1664493589 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
16 Hb_002728_020 0.168108196 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
17 Hb_000076_290 0.1696039355 - - translation factor sui1, putative [Ricinus communis]
18 Hb_000953_140 0.1701262163 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
19 Hb_000185_090 0.1701554162 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
20 Hb_002078_420 0.1703134201 - - PREDICTED: F-box only protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000753_210 Hb_000753_210 Hb_000739_290 Hb_000739_290 Hb_000753_210--Hb_000739_290 Hb_001178_060 Hb_001178_060 Hb_000753_210--Hb_001178_060 Hb_004206_040 Hb_004206_040 Hb_000753_210--Hb_004206_040 Hb_006275_050 Hb_006275_050 Hb_000753_210--Hb_006275_050 Hb_003050_090 Hb_003050_090 Hb_000753_210--Hb_003050_090 Hb_012760_200 Hb_012760_200 Hb_000753_210--Hb_012760_200 Hb_005228_100 Hb_005228_100 Hb_000739_290--Hb_005228_100 Hb_029388_040 Hb_029388_040 Hb_000739_290--Hb_029388_040 Hb_002374_440 Hb_002374_440 Hb_000739_290--Hb_002374_440 Hb_000212_130 Hb_000212_130 Hb_000739_290--Hb_000212_130 Hb_000771_160 Hb_000771_160 Hb_000739_290--Hb_000771_160 Hb_005016_030 Hb_005016_030 Hb_001178_060--Hb_005016_030 Hb_000322_170 Hb_000322_170 Hb_001178_060--Hb_000322_170 Hb_000640_210 Hb_000640_210 Hb_001178_060--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_000076_290 Hb_000076_290 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040 Hb_000779_040 Hb_000779_040 Hb_004206_040--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_004206_040--Hb_000792_110 Hb_000890_220 Hb_000890_220 Hb_004206_040--Hb_000890_220 Hb_000016_180 Hb_000016_180 Hb_004206_040--Hb_000016_180 Hb_035360_010 Hb_035360_010 Hb_004206_040--Hb_035360_010 Hb_025048_040 Hb_025048_040 Hb_004206_040--Hb_025048_040 Hb_013753_010 Hb_013753_010 Hb_006275_050--Hb_013753_010 Hb_006275_050--Hb_012760_200 Hb_006275_050--Hb_000890_220 Hb_004032_350 Hb_004032_350 Hb_006275_050--Hb_004032_350 Hb_000608_340 Hb_000608_340 Hb_006275_050--Hb_000608_340 Hb_000185_090 Hb_000185_090 Hb_006275_050--Hb_000185_090 Hb_003050_090--Hb_060437_010 Hb_001140_080 Hb_001140_080 Hb_003050_090--Hb_001140_080 Hb_001034_020 Hb_001034_020 Hb_003050_090--Hb_001034_020 Hb_003050_090--Hb_001178_060 Hb_000953_140 Hb_000953_140 Hb_003050_090--Hb_000953_140 Hb_001259_030 Hb_001259_030 Hb_003050_090--Hb_001259_030 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_012760_200--Hb_001034_020 Hb_012760_200--Hb_013753_010 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_012760_200--Hb_000331_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2580.45 1587.49 8.05636 13.2739 3576.84 2675.74
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1070.09 395.384 600.352 404.116 7.23183

CAGE analysis