Hb_000753_240

Information

Type -
Description -
Location Contig753: 245414-251811
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05990g
description POPTRDRAFT_823313; hypothetical protein
nr
ID XP_012080423.1
description PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
swissprot
ID Q8LB08
description ADP,ATP carrier protein ER-ANT1 OS=Arabidopsis thaliana GN=ER-ANT1 PE=2 SV=2
trembl
ID A0A067K577
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11757 PE=3 SV=1
Gene Ontology
ID GO:0005743
description carrier protein er-ant1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56931: 245421-251398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_240 0.0 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
2 Hb_003029_070 0.0595482306 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_004970_190 0.0622338249 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000866_010 0.0690644474 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000866_260 0.0714184746 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
6 Hb_002013_020 0.0729642275 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
7 Hb_000804_040 0.0747515551 - - protein with unknown function [Ricinus communis]
8 Hb_012022_150 0.0753179985 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
9 Hb_003513_010 0.0779068969 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
10 Hb_000137_040 0.0794908315 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
11 Hb_012395_230 0.0795728686 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
12 Hb_000236_240 0.0810692384 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
13 Hb_000690_160 0.0825501302 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
14 Hb_007389_010 0.0832191987 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
15 Hb_007007_120 0.0833287043 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_022693_140 0.0860763492 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
17 Hb_000205_190 0.0862804634 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
18 Hb_000465_090 0.0873003316 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
19 Hb_000917_060 0.0877826386 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
20 Hb_000869_020 0.0882068364 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]

Gene co-expression network

sample Hb_000753_240 Hb_000753_240 Hb_003029_070 Hb_003029_070 Hb_000753_240--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000753_240--Hb_004970_190 Hb_000866_010 Hb_000866_010 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020 Hb_000804_040 Hb_000804_040 Hb_000753_240--Hb_000804_040 Hb_002876_220 Hb_002876_220 Hb_003029_070--Hb_002876_220 Hb_000300_180 Hb_000300_180 Hb_003029_070--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_003029_070--Hb_004970_190 Hb_003029_070--Hb_000804_040 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_007007_120 Hb_007007_120 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_000917_060 Hb_000917_060 Hb_000866_260--Hb_000917_060 Hb_000866_260--Hb_007389_010 Hb_017358_030 Hb_017358_030 Hb_000866_260--Hb_017358_030 Hb_000866_260--Hb_002013_020 Hb_000329_320 Hb_000329_320 Hb_000866_260--Hb_000329_320 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_002013_020--Hb_003513_010 Hb_001456_060 Hb_001456_060 Hb_002013_020--Hb_001456_060 Hb_001163_050 Hb_001163_050 Hb_002013_020--Hb_001163_050 Hb_032202_140 Hb_032202_140 Hb_002013_020--Hb_032202_140 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_000804_040--Hb_000205_190 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_000804_040--Hb_012022_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66696 3.54671 7.47544 3.64732 6.23129 4.50241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80191 6.40784 5.18067 2.62913 6.58171

CAGE analysis