Hb_000753_260

Information

Type transcription factor
Description TF Family: MIKC
Location Contig753: 256158-262914
Sequence    

Annotation

kegg
ID tcc:TCM_014345
description AGAMOUS-like 8 isoform 1
nr
ID ACZ36916.1
description MADS-box transcription factor 3 [Hevea brasiliensis]
swissprot
ID Q42429
description Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1
trembl
ID D1MFS8
description MADS-box transcription factor 3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description agamous-like 8 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56933: 256162-262746 , PASA_asmbl_56934: 256162-262679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_260 0.0 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
2 Hb_000784_130 0.1266534363 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
3 Hb_002890_220 0.1266557037 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
4 Hb_002298_040 0.1272163693 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
5 Hb_005298_030 0.1298067264 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
6 Hb_002374_340 0.1299250403 - - Two-component response regulator ARR9, putative [Ricinus communis]
7 Hb_029879_080 0.1303181573 - - unknown [Populus trichocarpa]
8 Hb_003018_180 0.1317179285 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
9 Hb_010578_090 0.1323093962 - - HEV2.1 [Hevea brasiliensis]
10 Hb_116701_020 0.1335406703 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006735_040 0.133579989 - - unnamed protein product [Vitis vinifera]
12 Hb_000130_390 0.1378460178 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
13 Hb_001780_060 0.138628268 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
14 Hb_000175_520 0.1415432528 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_005496_060 0.1444358129 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
16 Hb_002518_250 0.145439968 - - conserved hypothetical protein 10 [Hevea brasiliensis]
17 Hb_004852_020 0.1524709177 - - -
18 Hb_009662_030 0.1545842899 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
19 Hb_019516_040 0.1555032374 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
20 Hb_002221_080 0.1573830463 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]

Gene co-expression network

sample Hb_000753_260 Hb_000753_260 Hb_000784_130 Hb_000784_130 Hb_000753_260--Hb_000784_130 Hb_002890_220 Hb_002890_220 Hb_000753_260--Hb_002890_220 Hb_002298_040 Hb_002298_040 Hb_000753_260--Hb_002298_040 Hb_005298_030 Hb_005298_030 Hb_000753_260--Hb_005298_030 Hb_002374_340 Hb_002374_340 Hb_000753_260--Hb_002374_340 Hb_029879_080 Hb_029879_080 Hb_000753_260--Hb_029879_080 Hb_003018_180 Hb_003018_180 Hb_000784_130--Hb_003018_180 Hb_000784_130--Hb_002298_040 Hb_000784_130--Hb_002890_220 Hb_000130_390 Hb_000130_390 Hb_000784_130--Hb_000130_390 Hb_004545_150 Hb_004545_150 Hb_000784_130--Hb_004545_150 Hb_002890_220--Hb_002374_340 Hb_000264_190 Hb_000264_190 Hb_002890_220--Hb_000264_190 Hb_017134_040 Hb_017134_040 Hb_002890_220--Hb_017134_040 Hb_002609_260 Hb_002609_260 Hb_002890_220--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_002890_220--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002890_220--Hb_005730_020 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_002298_040--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_002298_040--Hb_029879_080 Hb_000284_010 Hb_000284_010 Hb_002298_040--Hb_000284_010 Hb_005298_030--Hb_002890_220 Hb_002221_080 Hb_002221_080 Hb_005298_030--Hb_002221_080 Hb_005298_030--Hb_002374_340 Hb_000809_050 Hb_000809_050 Hb_005298_030--Hb_000809_050 Hb_030982_040 Hb_030982_040 Hb_005298_030--Hb_030982_040 Hb_002942_030 Hb_002942_030 Hb_002374_340--Hb_002942_030 Hb_002374_340--Hb_017134_040 Hb_005245_090 Hb_005245_090 Hb_002374_340--Hb_005245_090 Hb_007317_220 Hb_007317_220 Hb_002374_340--Hb_007317_220 Hb_000771_140 Hb_000771_140 Hb_002374_340--Hb_000771_140 Hb_029879_080--Hb_010578_090 Hb_029879_080--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_029879_080--Hb_115919_020 Hb_029879_080--Hb_000284_010 Hb_029879_080--Hb_002221_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
770.717 17.757 5.39326 2.53236 774.749 449.019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1061.99 333.938 337.563 62.3692 30.9382

CAGE analysis