Hb_000754_040

Information

Type -
Description -
Location Contig754: 25561-26965
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27500g
description POPTRDRAFT_752333; hypothetical protein
nr
ID XP_011011046.1
description PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GFF5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s27500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56969: 25461-26929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000754_040 0.0 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
2 Hb_000111_360 0.0557409928 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006915_050 0.0590682939 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
4 Hb_008695_210 0.0658229189 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
5 Hb_001277_330 0.0692765171 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
6 Hb_055062_030 0.0746349675 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
7 Hb_189003_080 0.0748936604 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
8 Hb_000567_260 0.0783005775 - - BnaA09g41440D [Brassica napus]
9 Hb_000928_210 0.0809774309 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
10 Hb_004254_120 0.0825705383 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002016_110 0.0834432111 - - transducin family protein [Populus trichocarpa]
12 Hb_002518_140 0.0851726862 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
13 Hb_005289_030 0.0867364539 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
14 Hb_005305_080 0.0867808205 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
15 Hb_000614_230 0.0869236888 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
16 Hb_011316_040 0.0870243771 - - peptidase, putative [Ricinus communis]
17 Hb_032202_190 0.0875853845 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
18 Hb_000907_080 0.0896276798 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
19 Hb_005663_060 0.090901286 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
20 Hb_002163_020 0.0912596802 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000754_040 Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_000754_040--Hb_000111_360 Hb_006915_050 Hb_006915_050 Hb_000754_040--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000754_040--Hb_008695_210 Hb_001277_330 Hb_001277_330 Hb_000754_040--Hb_001277_330 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_189003_080 Hb_189003_080 Hb_000754_040--Hb_189003_080 Hb_000111_360--Hb_006915_050 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_002006_090 Hb_002006_090 Hb_000111_360--Hb_002006_090 Hb_000111_360--Hb_001277_330 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_006915_050--Hb_008695_210 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_006915_050--Hb_189003_080 Hb_000614_230 Hb_000614_230 Hb_008695_210--Hb_000614_230 Hb_008695_210--Hb_000907_080 Hb_008695_210--Hb_189003_080 Hb_008695_210--Hb_002006_090 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_001277_330--Hb_002518_140 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_008453_090 Hb_008453_090 Hb_055062_030--Hb_008453_090 Hb_189003_080--Hb_000567_260 Hb_189003_080--Hb_002016_110 Hb_189003_080--Hb_001671_020 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.1401 20.8404 12.0009 16.1196 29.185 32.8918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3024 41.9363 55.8237 17.2526 21.0536

CAGE analysis