Hb_000755_030

Information

Type -
Description -
Location Contig755: 28061-31414
Sequence    

Annotation

kegg
ID rcu:RCOM_1017010
description ubiquitin fusion degradaton protein, putative
nr
ID XP_012080616.1
description PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
swissprot
ID Q92890
description Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3
trembl
ID A0A067KEW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13723 PE=4 SV=1
Gene Ontology
ID GO:0006511
description ubiquitin fusion degradaton

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57009: 28174-31463
cDNA
(Sanger)
(ID:Location)		 028_C21.ab1: 28174-29319 , 045_A18.ab1: 28174-29506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000755_030 0.0 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
2 Hb_093432_010 0.0702771812 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
3 Hb_006951_020 0.0759744129 - - Rop3 [Hevea brasiliensis]
4 Hb_000645_120 0.0773547532 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
5 Hb_009969_030 0.082783801 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
6 Hb_033187_050 0.0895598731 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
7 Hb_011310_210 0.091608641 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
8 Hb_005532_050 0.0933627766 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_007188_070 0.0949447944 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
10 Hb_000939_060 0.0953103136 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
11 Hb_000077_230 0.0954721962 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
12 Hb_008714_020 0.0963068891 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
13 Hb_046931_010 0.0971215899 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
14 Hb_057878_010 0.0972711931 - - hypothetical protein VITISV_036304 [Vitis vinifera]
15 Hb_008864_110 0.0981129999 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
16 Hb_000283_070 0.0987071734 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
17 Hb_000322_100 0.0993425716 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
18 Hb_008695_120 0.1003041661 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
19 Hb_003124_130 0.1003868177 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
20 Hb_031091_010 0.1036926806 - - crooked neck protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000755_030 Hb_000755_030 Hb_093432_010 Hb_093432_010 Hb_000755_030--Hb_093432_010 Hb_006951_020 Hb_006951_020 Hb_000755_030--Hb_006951_020 Hb_000645_120 Hb_000645_120 Hb_000755_030--Hb_000645_120 Hb_009969_030 Hb_009969_030 Hb_000755_030--Hb_009969_030 Hb_033187_050 Hb_033187_050 Hb_000755_030--Hb_033187_050 Hb_011310_210 Hb_011310_210 Hb_000755_030--Hb_011310_210 Hb_093432_010--Hb_009969_030 Hb_003966_030 Hb_003966_030 Hb_093432_010--Hb_003966_030 Hb_000283_070 Hb_000283_070 Hb_093432_010--Hb_000283_070 Hb_000574_100 Hb_000574_100 Hb_093432_010--Hb_000574_100 Hb_003124_130 Hb_003124_130 Hb_093432_010--Hb_003124_130 Hb_000322_100 Hb_000322_100 Hb_006951_020--Hb_000322_100 Hb_001047_030 Hb_001047_030 Hb_006951_020--Hb_001047_030 Hb_002067_120 Hb_002067_120 Hb_006951_020--Hb_002067_120 Hb_007477_080 Hb_007477_080 Hb_006951_020--Hb_007477_080 Hb_003502_080 Hb_003502_080 Hb_006951_020--Hb_003502_080 Hb_000645_120--Hb_000283_070 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_000645_120--Hb_003124_130 Hb_009969_030--Hb_033187_050 Hb_000347_130 Hb_000347_130 Hb_009969_030--Hb_000347_130 Hb_009969_030--Hb_003124_130 Hb_009969_030--Hb_000283_070 Hb_033187_050--Hb_000645_120 Hb_011030_010 Hb_011030_010 Hb_033187_050--Hb_011030_010 Hb_147737_010 Hb_147737_010 Hb_033187_050--Hb_147737_010 Hb_003531_060 Hb_003531_060 Hb_033187_050--Hb_003531_060 Hb_000531_090 Hb_000531_090 Hb_033187_050--Hb_000531_090 Hb_008120_030 Hb_008120_030 Hb_011310_210--Hb_008120_030 Hb_000777_050 Hb_000777_050 Hb_011310_210--Hb_000777_050 Hb_003549_090 Hb_003549_090 Hb_011310_210--Hb_003549_090 Hb_002942_050 Hb_002942_050 Hb_011310_210--Hb_002942_050 Hb_011310_130 Hb_011310_130 Hb_011310_210--Hb_011310_130 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.9176 52.2162 33.0574 35.1747 53.3367 92.2839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8707 21.7215 42.85 20.4776 15.4092

CAGE analysis