Hb_000755_080

Information

Type -
Description -
Location Contig755: 87005-91146
Sequence    

Annotation

kegg
ID rcu:RCOM_1016710
description hypothetical protein
nr
ID XP_002529332.1
description hypothetical protein RCOM_1016710 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STL3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1016710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57015: 87031-89223 , PASA_asmbl_57016: 89238-102268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000755_080 0.0 - - hypothetical protein RCOM_1016710 [Ricinus communis]
2 Hb_000261_520 0.0671140638 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
3 Hb_000365_140 0.1043585139 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
4 Hb_005895_040 0.1065202179 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
5 Hb_004656_060 0.1086741966 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
6 Hb_000375_030 0.1129964019 - - -
7 Hb_000640_220 0.1145209708 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
8 Hb_000422_140 0.1152855443 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
9 Hb_004512_020 0.1187366557 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
10 Hb_004567_100 0.120371748 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
11 Hb_091384_010 0.1219200442 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
12 Hb_000940_040 0.1255916173 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
13 Hb_003097_190 0.127306747 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
14 Hb_000406_040 0.1275878609 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
15 Hb_004376_030 0.1297853123 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
16 Hb_017711_020 0.1298695186 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
17 Hb_000037_110 0.1304037985 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
18 Hb_000021_040 0.1319317044 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
19 Hb_004767_090 0.132314915 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
20 Hb_000270_140 0.1342179381 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000755_080 Hb_000755_080 Hb_000261_520 Hb_000261_520 Hb_000755_080--Hb_000261_520 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_005895_040 Hb_005895_040 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000375_030 Hb_000375_030 Hb_000755_080--Hb_000375_030 Hb_000640_220 Hb_000640_220 Hb_000755_080--Hb_000640_220 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000261_520--Hb_000640_220 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030 Hb_002477_130 Hb_002477_130 Hb_000365_140--Hb_002477_130 Hb_000946_120 Hb_000946_120 Hb_000365_140--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_000365_140--Hb_000032_490 Hb_000422_140 Hb_000422_140 Hb_000365_140--Hb_000422_140 Hb_000365_140--Hb_000640_220 Hb_000365_140--Hb_005895_040 Hb_005895_040--Hb_000422_140 Hb_009151_020 Hb_009151_020 Hb_005895_040--Hb_009151_020 Hb_005895_040--Hb_002477_130 Hb_005895_040--Hb_004656_060 Hb_004701_030 Hb_004701_030 Hb_005895_040--Hb_004701_030 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_004656_060--Hb_004701_030 Hb_004656_060--Hb_000422_140 Hb_023001_020 Hb_023001_020 Hb_004656_060--Hb_023001_020 Hb_004656_060--Hb_000640_220 Hb_002587_020 Hb_002587_020 Hb_004656_060--Hb_002587_020 Hb_000375_030--Hb_000640_220 Hb_000375_030--Hb_005895_040 Hb_005408_020 Hb_005408_020 Hb_000375_030--Hb_005408_020 Hb_000375_030--Hb_002477_130 Hb_000375_030--Hb_009151_020 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20432 4.6639 3.97843 4.2753 21.889 10.7531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40421 3.82952 4.60562 3.40762 2.35474

CAGE analysis