Hb_000757_030

Information

Type -
Description -
Location Contig757: 25541-33592
Sequence    

Annotation

kegg
ID rcu:RCOM_1333590
description radical sam protein, putative (EC:1.3.1.74)
nr
ID XP_002521816.1
description radical sam protein, putative [Ricinus communis]
swissprot
ID Q6NS26
description Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis GN=cdkal1 PE=2 SV=1
trembl
ID B9S747
description Radical sam protein, putative OS=Ricinus communis GN=RCOM_1333590 PE=4 SV=1
Gene Ontology
ID GO:0003824
description threonylcarbamoyladenosine trna methylthiotransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000757_030 0.0 - - radical sam protein, putative [Ricinus communis]
2 Hb_000300_180 0.0690172633 - - transcription initiation factor brf1, putative [Ricinus communis]
3 Hb_005542_130 0.0725303175 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
4 Hb_000254_100 0.076750358 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
5 Hb_000304_070 0.0782570728 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
6 Hb_003363_070 0.0789278268 - - -
7 Hb_010931_070 0.0800995926 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
8 Hb_000088_190 0.0817909548 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000144_070 0.0841265863 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001025_120 0.0849348693 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
11 Hb_000789_320 0.0861131255 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_003513_010 0.0874152012 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
13 Hb_001623_270 0.0877476976 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
14 Hb_005588_080 0.0908336279 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
15 Hb_171900_040 0.0912581957 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
16 Hb_001824_080 0.0916380423 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
17 Hb_000869_020 0.0923378711 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
18 Hb_004052_080 0.0923385344 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000085_190 0.0926757312 - - FtsZ1 protein [Manihot esculenta]
20 Hb_170416_010 0.0929705117 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000757_030 Hb_000757_030 Hb_000300_180 Hb_000300_180 Hb_000757_030--Hb_000300_180 Hb_005542_130 Hb_005542_130 Hb_000757_030--Hb_005542_130 Hb_000254_100 Hb_000254_100 Hb_000757_030--Hb_000254_100 Hb_000304_070 Hb_000304_070 Hb_000757_030--Hb_000304_070 Hb_003363_070 Hb_003363_070 Hb_000757_030--Hb_003363_070 Hb_010931_070 Hb_010931_070 Hb_000757_030--Hb_010931_070 Hb_003029_070 Hb_003029_070 Hb_000300_180--Hb_003029_070 Hb_000640_160 Hb_000640_160 Hb_000300_180--Hb_000640_160 Hb_002876_220 Hb_002876_220 Hb_000300_180--Hb_002876_220 Hb_000190_030 Hb_000190_030 Hb_000300_180--Hb_000190_030 Hb_000300_180--Hb_000304_070 Hb_003159_140 Hb_003159_140 Hb_005542_130--Hb_003159_140 Hb_002374_230 Hb_002374_230 Hb_005542_130--Hb_002374_230 Hb_003292_030 Hb_003292_030 Hb_005542_130--Hb_003292_030 Hb_001623_270 Hb_001623_270 Hb_005542_130--Hb_001623_270 Hb_000789_320 Hb_000789_320 Hb_005542_130--Hb_000789_320 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_004109_120 Hb_004109_120 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000567_070 Hb_000567_070 Hb_000254_100--Hb_000567_070 Hb_003186_020 Hb_003186_020 Hb_000254_100--Hb_003186_020 Hb_001824_080 Hb_001824_080 Hb_000254_100--Hb_001824_080 Hb_010863_050 Hb_010863_050 Hb_000304_070--Hb_010863_050 Hb_000304_070--Hb_001623_270 Hb_000304_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000304_070--Hb_005588_080 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300 Hb_009296_070 Hb_009296_070 Hb_003363_070--Hb_009296_070 Hb_003363_070--Hb_010931_070 Hb_170416_010 Hb_170416_010 Hb_003363_070--Hb_170416_010 Hb_006132_090 Hb_006132_090 Hb_003363_070--Hb_006132_090 Hb_003363_070--Hb_000304_070 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48548 0.995995 2.75145 0.927408 1.1106 0.923416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05591 1.45893 1.1488 1.25104 1.79184

CAGE analysis