Hb_000757_080

Information

Type -
Description -
Location Contig757: 97208-97979
Sequence    

Annotation

kegg
ID rcu:RCOM_1334230
description vacuolar ATP synthase subunit G plant, putative
nr
ID XP_002521830.1
description vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
swissprot
ID Q9SP55
description V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1
trembl
ID B9S761
description Vacuolar ATP synthase subunit G plant, putative OS=Ricinus communis GN=RCOM_1334230 PE=4 SV=1
Gene Ontology
ID GO:0016471
description v-type proton atpase subunit g1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000757_080 0.0 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
2 Hb_181132_010 0.003484234 - - -
3 Hb_100821_010 0.0118046639 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
4 Hb_002928_080 0.0170671468 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
5 Hb_002392_060 0.0177089992 - - gag/pol protein [Bryonia dioica]
6 Hb_003878_160 0.0179500058 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008948_030 0.0219764713 - - hypothetical protein RCOM_0224470 [Ricinus communis]
8 Hb_003589_010 0.0241419575 - - -
9 Hb_155103_010 0.0274911912 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_001433_010 0.0458764095 - - -
11 Hb_020805_020 0.0490722355 - - -
12 Hb_002240_030 0.0585708486 - - -
13 Hb_000046_130 0.0626094622 - - Peroxidase 27 precursor, putative [Ricinus communis]
14 Hb_047735_010 0.0822138745 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
15 Hb_002495_020 0.124836759 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
16 Hb_001488_050 0.1485139253 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
17 Hb_007809_070 0.1583564473 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022790_030 0.1772930402 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
19 Hb_001948_010 0.2801496404 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_008071_030 0.3078479073 - - -

Gene co-expression network

sample Hb_000757_080 Hb_000757_080 Hb_181132_010 Hb_181132_010 Hb_000757_080--Hb_181132_010 Hb_100821_010 Hb_100821_010 Hb_000757_080--Hb_100821_010 Hb_002928_080 Hb_002928_080 Hb_000757_080--Hb_002928_080 Hb_002392_060 Hb_002392_060 Hb_000757_080--Hb_002392_060 Hb_003878_160 Hb_003878_160 Hb_000757_080--Hb_003878_160 Hb_008948_030 Hb_008948_030 Hb_000757_080--Hb_008948_030 Hb_181132_010--Hb_003878_160 Hb_181132_010--Hb_100821_010 Hb_181132_010--Hb_008948_030 Hb_181132_010--Hb_002928_080 Hb_003589_010 Hb_003589_010 Hb_181132_010--Hb_003589_010 Hb_100821_010--Hb_002928_080 Hb_100821_010--Hb_002392_060 Hb_100821_010--Hb_003878_160 Hb_100821_010--Hb_008948_030 Hb_002928_080--Hb_002392_060 Hb_001433_010 Hb_001433_010 Hb_002928_080--Hb_001433_010 Hb_020805_020 Hb_020805_020 Hb_002928_080--Hb_020805_020 Hb_002392_060--Hb_181132_010 Hb_002392_060--Hb_001433_010 Hb_002392_060--Hb_020805_020 Hb_003878_160--Hb_008948_030 Hb_003878_160--Hb_003589_010 Hb_155103_010 Hb_155103_010 Hb_003878_160--Hb_155103_010 Hb_008948_030--Hb_003589_010 Hb_008948_030--Hb_155103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0659266 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0510958 0

CAGE analysis